barSeed - Barley Seed Development Database

Probe CUST_17109_PI390587928

Source Contig U35_3810

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17109_PI390587928	Hv_44K_v2	GCCTGTGAAAAGCTATGTGTGTATGAATGAGACTATGAGCTAGTAAAAAACTCCTCCTTT	732	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.428	3.130	1.289	1.053	0.584	0.478
Raw	43.265	62.370	22.666	31.789	4.948	3.716

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366927	938	2e-24	749 - 808	100	60 / 60	plus	ABC09758
MLOC	MLOC_72131.1	1421	2e-24	503 - 562	100	60 / 60	plus	ABC09758
JLOC1	JLOC1_47983.1	702	8e-25	501 - 560	100	60 / 60	plus
Harvest21	ABC09758	814	3e-25	733 - 792	100	60 / 60	plus	ABC09758
Harvest21	ABC47124	501	2e-21	18 - 74	98	56 / 57	minus
Harvest35	U35_3810	856	3e-25	733 - 792	100	60 / 60	plus

Contig Sequence (856 bp)

>U35_3810 856 Hv_44K_v2
TCTCCATCTCCCTCCCGGCCTGCACACACAAGCATCGAAGACTTCTCTGCCTTCTTCCTC
CGCCAGTCTTCTTTCTGCCATGAAACCCCCTCACTTCACCGGGGAGGCCGCGGCCAGCGC
CTCATGGGCTCACGAGGTCAAGCAGGCCCTCCGTGACAAGCTCCGGTGGACACCCCCCGC
GGGCACCACGGGTACCGGCGGCGGCGCCGCGAGGCCGCCGCCGGCCTCCTCGGCTGTAAC
CGCCGAGCCGGCGGCGCAGCCTCCCCACGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGA
GGACCCCATCAGGAGGGTCATGTTCTTGGCCCCATGGGGCCACACATAAACATGAAAGAA
CGCATGCATGCGTAGGCCGGCCATGTCTTGTCTTGGCCGGATCTGCAACTGCACCTGAAC
AAAAACCATGGAGTACTACATACATATATATATGTGGCCATGCATATGAACCATGAACAA
GCACTCATCAAGGACTAATGAAAAACTAGATCGAGATGGGGCATGATCCGAGAGAGATGT
GCTTGAGTAAGTAGTTTATGTTTCTCTTGGCGATCGAGATGCATGGGGAGAGCTCGCCTG
GCCTGACGGGTTCGTGCTTGCATGTGGGTGTTGCTGCCTGCCTGGGTTGAAGCTGCGCAA
GAGCTGCAGCTTTGTTGTAGCCATGAAGGCATGAACCTGTTTTTTTGTTTCTCTCCACAG
TCTGTACCAAGAGCCTGTGAAAAGCTATGTGTGTATGAATGAGACTATGAGCTAGTAAAA
AACTCCTCCTTTTTTCAAAAAAAAAAAAAAAAAATGGCATGTCTATCTCCCCGGGTGTTC
CTTGCCCCCTGTAGTT

Homology of Contig U35_3810 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None