barSeed - Barley Seed Development Database

Probe CUST_17108_PI390587928

Source Contig U35_3811

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17108_PI390587928	Hv_44K_v2	GAACCCTCAAGTTCCCATGTAAGTATATGTGAATATAAAATACTTATGCTAATGGCGCGC	1114	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.464	1.648	1.060	0.843	0.307	0.343
Raw	42.281	72.258	42.027	53.361	6.449	7.924

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10609.3	1266	3e-22	1206 - 1264	98	59 / 60	plus	ABC09108 ABC09109
MLOC	MLOC_10609.1	1321	3e-22	1261 - 1319	98	59 / 60	plus	ABC09108 ABC09109
JLOC1	JLOC1_6948.1	1333	1e-22	1261 - 1319	98	59 / 60	plus
Harvest21	ABC09109	574	3e-25	1 - 60	100	60 / 60	minus	ABC09109
Harvest35	U35_3811	1174	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_3811 1174 Hv_44K_v2
CGGGCTGCAGGAATTCGGCTCGAGGCTCAAACACCGGCGGGCTCATCCTCAAGTACAACT
CCATGCAGGGCTTCGTGCCCAACCCTCTCCTCAGCCCCGCGCATTGGTGTAAAGATCCTA
AAAGGCCCATTCAAGATGTTACAAAGGACCTAGTAGGTTCCTCTGTTTCTGTCAAGGTCG
TTGAAGCGAATGAGGCAGAAAAAAAGCTTGTCTTCTCTGAGAAGGATGCCAGTTGGTCAT
TGTACTCTTCTCAAGTAAAGATTGGTGGTATCTATGATGGAATTGTTGGTTCAGTGTTCC
ACTATGGTGCATTTGTTCACCTGCAATTTCCTGATGGAAATTATCATCTCACTGGTCTCG
TACATATCTCTGAGGTCTCTTGGGATCTTGTCCAAGATGTCCAAGATTTTCTAACCGAAG
GTGATACCGTCAAGGTCATAGTGGTGAATGTTGATGCGGAGAAATCAAGGATAGGTTTGT
CAATCAGGCAATTGGAGGAAGATCCTCTGCTGGAGACATTGGACAAAATTATTCCTTTGG
AACCCGATCTATCACCTGATGCTGAGGCCGCGTCATCTCCTCCAGAAATTGAACTTCTTC
CAGGACTAGACGGGATATGTAATGAACTTTTACAAGAGGACGGTATAACAGATGTGCGGT
TCGGGCGGCAGGCGTTGGAGAAACGTGTGGTTTCGCAAGATCTAGAGCTCTGGCTTTCTA
GTGTTCCAGCTAAGGACAACCAGTACAAGCTTCTTGCTCGAGCTGGGAGACAGGTCCAGG
AAGTGTACCTGACGACGAGCCTAGACCAGGAGGGGGTGAAGAAGGCGGTGCAAAGAGTAC
TAGGACGCGTTCCCTGAGCCCGCCTGCCAGCCCGCCCGTAGCTCATCGGAATTCGGAAGA
ATGAGGTATATCAATCATCCCCGGACTGTGCCCTACCCTAACTAAGCGACCACAATGTAC
ATACTTTAGTTGGAAGAAGAAAAAAAAAACGCCAGTTTACGGGCCGGCTTTGTGCCGAGG
CTCAGTTGTACATTTTTTCACCACTGGAATATATAGCACGTCGATCGGCAATCATTTGGT
TGGTGCCTGAGATGGCACGCGTGTAAAAAGAAGTGAACCCTCAAGTTCCCATGTAAGTAT
ATGTGAATATAAAATACTTATGCTAATGGCGCGC

Homology of Contig U35_3811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62780.1	380	3e-168	protein\|S1 RNA binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g01880.1	380	1e-179
Arabidopsis v10	AT3G23700.1	392	5e-107	Nucleic acid-binding proteins superfamily \| chr3:8531689-8533742 REVERSE LENGTH=392