barSeed - Barley Seed Development Database

Probe CUST_17097_PI390587928

Source Contig U35_13213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17097_PI390587928	Hv_44K_v2	TGTACGTAGCAAACGAGATTTTGTTGGTCAGTCTCTCATCAGCATTCGGAAAACAAAAAA	703	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.493	7.589	1.534	0.748	0.397	0.473
Raw	181.495	217.840	36.303	28.427	3.165	6.063

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355729	883	2e-23	730 - 787	100	58 / 58	plus	ABC24302
MLOC	MLOC_29381.2	620	2e-23	356 - 413	100	58 / 58	plus	ABC24302
JLOC1	JLOC1_19570.1	598	1e-23	356 - 413	100	58 / 58	plus
Harvest21	ABC24302	774	3e-25	704 - 763	100	60 / 60	plus	ABC24302
Harvest35	U35_13213	774	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (774 bp)

>U35_13213 774 Hv_44K_v2
GCCGCTCTCTGCGCCGCGCGCGCATGCCGCCGCTGCCTTCTCCTGCAGCCCCACTTATAT
CTCCCGGCTCCAATGGGCAGCCACTTCCCACAGCCGCGCGCGCCCTCTGCACGCCCGCAG
GAACAAGAACTCCAGGGGCGACCCTGCGGAGCCCAAAGTCATCACCATCGGCAGGCCCGG
GAAGAAGAGCAAGCGGCGCGGCGACAAGAAGCAGGATCAGCAGCAGCTCTCCGCGGACCA
AGAAGATGAAGACGACGACGAGGAGGAGGATGAGGAGGAGGACGAGAGGGACGTGGCGAT
CCCGGAGGTGGTGACGAACCGGATGATGCGGCGGGTGGGGGCGTCNGTGGGGCTCCCACT
GGCGCTGGGGCTGGCCTTCTTCCCGGCGTTCTACTACCTGAAGAAAGTGGCGAAAGTGGA
CGTGCCGAGCTTCATCCCCTACGGTCTGTCCTTCGTCTTCTTCGGGGCGGCGCTGGCCGG
CGTGAGCTACGGCATCGTGTCCGCCAGCTGGGACCCCGCCAGGGAGGGCTCCCTGCTCGG
CTGGAACGAGGCCCGCCGCAACTGGCCCGTCTTCTGGGAGTCCTTCCGGGGCACCCCTCC
TCCTCCGGGCCCTCCTCGCCGGGGACGATGATGATAGGCTGTCGTGGTAACTCGGTTAAG
CTTAATTACTTGTTTCCCACAGTTTCCTCTTCTTGTTTACGCCTGTACGTAGCAAACGAG
ATTTTGTTGGTCAGTCTCTCATCAGCATTCGGAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_13213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None