- Probe CUST_17084_PI390587928
- Source Contig U35_13228
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_17084_PI390587928 | Hv_44K_v2 | TTTGTACTCTCGAATCGGTTTGGCCAAGCATTCTAAGCGTGTTCTTGATCGTATAAAAAA | 390 | GeneList: salmon MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 12.112 | 6.506 | 1.297 | 0.634 | 0.392 | 0.339 |
Raw | 217.926 | 193.861 | 31.971 | 27.024 | 3.701 | 3.573 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_75673.1 | 900 | 3e-22 | 129 - 184 | 100 | 56 / 56 | minus | ABC24253 |
JLOC1 | JLOC1_50484.1 | 1183 | 1e-22 | 410 - 465 | 100 | 56 / 56 | minus | |
Harvest21 | ABC24253 | 461 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC24253 |
Harvest35 | U35_13228 | 461 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus |
Contig Sequence (461 bp)
>U35_13228 461 Hv_44K_v2 CAGCTCTCCTCGTCCAGCCAGAAACCAAGGCAGCCATGGCGTCGCTAGCCCTGAGGCCCA TCATGCCAGCCACCGTGGCGTGGTCCCTCTACACGCTCGGCGCGGCGGAGGGCGTCAGCT ACCTCGTGGTGGCGGGCATCGTCGGCTGGTCGCTCACCACCAAGGTGCGCACCGGGTCGG GCCTCCCGGCAGGGCCCTACGGCCTCCTCGGCGCCGCCGAGGGCGTCGCGTACCTCACCG TCGTCGCCATCGCCGCCGTGTTCGGGCTGCAGTTCTTCCAGCAGGGGTCGATCCCGGGCC CGTTGCCGTCGGAGCAGTGCCTTGGCTAAGAATGCATGGCTGATGCTGTGAATCGTGTGA GACTCGATCGAGTGCGTGTTCCTGGTTCAGTTTGTACTCTCGAATCGGTTTGGCCAAGCA TTCTAAGCGTGTTCTTGATCGTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_13228 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |