barSeed - Barley Seed Development Database

Probe CUST_17076_PI390587928

Source Contig U35_25207

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17076_PI390587928	Hv_44K_v2	AAGTAAAATTCAGTCAAGGAGGAAACGACCATCTCATGTCTTGGGTGCAGGACCATTGAG	755	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39957.2	2445	2e-24	610 - 669	100	60 / 60	minus	ABC17325
MLOC	MLOC_39959.1	824	6e-24	563 - 621	100	59 / 59	minus	ABC17325
JLOC1	JLOC1_26102.2	931	8e-25	181 - 240	100	60 / 60	plus
Harvest21	ABC25243	969	3e-25	756 - 815	100	60 / 60	plus
Harvest35	U35_25207	969	3e-25	756 - 815	100	60 / 60	plus

Contig Sequence (969 bp)

>U35_25207 969 Hv_44K_v2
AAGGCAAAAGTTCTTATCAAGAAGAACATCTATAAGGATGCACTGGATGTTTTGATGATG
TCTGAGGAAGCCTTTTCTCTTTGTGACGCTAAACTCATTGAGAGAGTTGATAATGTGCCA
ATGCTTCAACTGGATATAGTCTGGTGTTATTTTATGCTTCGTGATGTATCACGCTTAGAA
GTTGCAGGGGCTCGCCTAAACAAGGCTAGGTTAGGATTTGAACTTTCCCACGGTAAAGAT
TCCACACGCTTCAGATTACTCCAGGCAGCCCGTCATGCAGATCTGGCTCTCTATGTAAGA
CTGGAGCTTTTGGAAGGAGTGGTGGCCTATTATAATGGTCATACTGAAAAGGCACGTGGT
TCTCTCAGTTCTGCACAGTCTAAATACATGCAGCTGCAAGTACCAGATGAAGCTATAGCA
ATGCTAACGGATATGGGCTACGATGCCCGAGCATCAAAAAGAGCACTAAAGATGACTGGC
TATGATATTCAATCTTCTGTTGATCTCTTATGTGAGGAACGTGAAAAGAAAATCCGTAGA
AGGGAGCAGGACATAGAGACAGAAAGAGAGATCATGGAACAAAGGAGATATGGTAAAACT
CCCATGAACAAGGCAGTTGATATGCAGAAGTTGAGAGGCTTGACTACTATCGGGTTTGAG
AAGTACCTTGCTGCAGAAGCACTCCGCATAAACGAAAATGATGCTGAGAAAGCATTAGAT
CTTTTGACAAATCCTGAACTGAACTGTGCCCTACAAAGTAAAATTCAGTCAAGGAGGAAA
CGACCATCTCATGTCTTGGGTGCAGGACCATTGAGGGCCGGGCCTGCCGCTGCTGTGGCT
GCTGCAGTGGCTGGTAATGCTCCACCACAGATACCGGATCTCAACGCTGCCGAGGGCGGC
AATCAGGAACAGCTTGTGAACAACGGCGCAGAAGCTGCGGCCAATGACGCAGAAGCTGCG
GACAACGAC

Homology of Contig U35_25207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55150.2	565	8e-132	protein\|UBA/TS-N domain containing protein, expressed
Brachypodium v1_2	Bradi5g23760.1	578	1e-149
Arabidopsis v10	AT2G12550.1	562	1e-89	ubiquitin-associated (UBA)/TS-N domain-containing protein \| chr2:5114881-5118486 FORWARD LENGTH=562