barSeed - Barley Seed Development Database

Probe CUST_17074_PI390587928

Source Contig U35_13230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17074_PI390587928	Hv_44K_v2	ATAAATACTGTGGAAAAACCTGACCCGTTGGCCATTGAGCATTGACACCGCGAGTTTCTT	1063	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.284	1.711	1.386	0.952	0.333	0.364
Raw	7786.383	16126.803	11181.223	12215.437	1515.827	1782.283

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365938	1857	2e-24	1786 - 1845	100	60 / 60	plus	None
MLOC	MLOC_52207.4	1593	2e-24	1450 - 1509	100	60 / 60	plus	None
MLOC	MLOC_52207.2	1596	2e-24	1453 - 1512	100	60 / 60	plus	None
MLOC	MLOC_52207.1	1825	2e-24	1715 - 1774	100	60 / 60	plus	None
JLOC1	JLOC1_33425.2	1709	8e-25	1495 - 1554	100	60 / 60	plus
JLOC1	JLOC1_33425.1	1742	8e-25	1528 - 1587	100	60 / 60	plus
Harvest21	ABC22534	1129	3e-25	1064 - 1123	100	60 / 60	plus
Harvest35	U35_13230	1129	3e-25	1064 - 1123	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_13230 1129 Hv_44K_v2
GCTGAATTTAAAGGCAATATACCACACTGCTGCAGGAGAGACCCAACAACAGTTGACTTG
CTTCCTGGTGCGGCTATGGGCATGCAGGTGGGAAATTGNNGCAAAGGAGGAGTNNTTAGC
TCATGGGTGCAAGATCCTGTCAACGCAGTGGCATCGTTTCAGATCACTGTTGGCCGAGCA
GGAACGAGCAATAGGACAGTGAAAGCACCGAAAAACTTNACCCTCAAGGCCCCAGGTCCA
GGGTATACCTGTGGAGTAGCCCACAAAGTAAAACCTCCCACTAAGTTCATTTCGCTCGAT
GGAAGGAGAACAACTCAAGCGCATGTGACTTGGGATGTCATATGCACATATTCACAGTTT
GTTGCTCAAAGAGGCCCTGCCTGTTGNGTTTCACTATCATCCTTTTACAACGAAACGATA
GTCGACTGCCCAAAATGTTCATGTGCCTGCCAAAACAATATAACCCACCCTGGGAGCTGC
GTTGAGGGTAATTCGCCTTACTTGGCTTCAGTGGTGAATGGACCTGGCAAGGGCAGCTCA
ACCCCTCTAGTGCGATGTTCACCCCATATGTGCCCAATCAGGGTGCACTGGCATGTTAAG
GTCAACTATAGGGACTACTGGAGGGTGAAGATCACCATTTCAAATTGGAATTACCGGATG
AACTACTCGCAGTGGAACTTGGTTGTTCAGCACCCAAATTTCGACAATGTCACTACAATT
TTCAGTTTCAACTACAAAGCATTGAACCCCTATGGAGTAATAAATGATACCGCGATGCTG
TGGGGCCTCAAGTACTACAATGACCTGCTCATGGTAGCTGGTCCAGATGGCAATGTGCAA
ACCGAGCTTCTATTCAGGAAGGACCCATCAACATTCACTTTCGAGAAGGGCTGGGGTTTT
CCAAGGCGCATATACTTCAATGGTGAGAGTTGCGTCATGCCTCAACCAGATTTGTACCCA
TGGCTGCCAAGCTCCTCCCCAAGATTGACCAAGACGGCATTTCTGGCTCTGGCCATTGTC
GCTTGCGCAACGGTGGCGTTCTTGTACAATCATCTAGTGTTGGATAAATACTGTGGAAAA
ACCTGACCCGTTGGCCATTGAGCATTGACACCGCGAGTTTCTTGCAAGT

Homology of Contig U35_13230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g30260.1	459	0.0	protein\|COBRA-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g59890.1	458	0.0
Arabidopsis v10	AT5G60920.1	456	4e-173	\| Symbols: COB \| COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family \| chr5:24511466-24513932 REVERSE LENGTH=456