barSeed - Barley Seed Development Database

Probe CUST_17072_PI390587928

Source Contig U35_13232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17072_PI390587928	Hv_44K_v2	GACAACTCATGAGATGTAACAGCTAACAATTTTAATCCAATACCATTTCCCCTGACAAAA	572	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.271	0.651	0.937	2.090	1.080	1.578
Raw	11.944	46.636	57.403	197.404	37.814	58.556

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5187.1	2033	9e-22	836 - 890	100	55 / 55	plus	ABC23207
JLOC1	JLOC1_3323.3	1272	5e-22	630 - 684	100	55 / 55	plus
Harvest21	ABC23207	644	3e-25	14 - 73	100	60 / 60	minus	ABC23207
Harvest35	U35_13232	645	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_13232 645 Hv_44K_v2
GTTTCATGCGGTGATATTTCGTTGATTTCTTCATATGAGAAGGTGGAGAACTGTGTCTAC
ACATCGACGCTTCTAAGAAAATGTGGTAGATGGGGTTCTGAGGTGGCAAATCCTAAAAAT
AATTGTTCCAGGTGGAAATTGACACATGCTGAGAGATTTGCTGCTGATTTCTACATAACA
GATGCAAAATCCGGCAAAAGAGCCTTGGTGAAAGCTGGATACCACACGAAAGTTGTTCCA
TTGATCGATGAAAATGTTTTGGTTACAACAAGCCGAAGTACTGATCTATCTTCAACCTTG
AAATGTTGGCTAGAAGAAAGAAATCTTTTTTCTGAAGAAGCTCAGCTTATCCGTCTTGAG
GAAGGATATATCACGGAAGGAATGAGATTGAGTGTGATCGGAATTTTGAGCAAGAAGAAT
GGAGATTTCATGATACTTCCTCCTCGTGAACCTATATCTACAGGTTGTGTCTTGCAGTCA
TTTCTCCTTCCAGCTTATTTTGATGGAATAGTTCTGAGACTAGTAGACAAGAGTTATTTT
ATGCCACATTCTGGAATTTCATGAAATATTTTGACAACTCATGAGATGTAACAGCTAACA
ATTTTAATCCAATACCATTTCCCCTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_13232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45821.1	319	5e-103	protein\|expressed protein
Brachypodium v1_2	Bradi5g17187.1	320	8e-107
Arabidopsis v10	None