barSeed - Barley Seed Development Database

Probe CUST_17068_PI390587928

Source Contig U35_13238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17068_PI390587928	Hv_44K_v2	TACATGATCTTCGTCGCGCTGCGGTACACCACGGCCACCTTCGTCACGGCCTTCTCCAAC	527	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70482.1	4644	2e-24	3897 - 3956	100	60 / 60	minus	ABC02275 ABC02277 ABC02278 ABC26803
MLOC	MLOC_70480.1	3799	2e-24	3052 - 3111	100	60 / 60	minus	ABC02275 ABC02277 ABC02278 ABC26803
JLOC1	JLOC1_46775.1	2727	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC21839	616	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_13238	618	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_13238 618 Hv_44K_v2
GCGGTGGTGGTGGCCGAAACCAAAAGCCGCCGTACCTGAAACGATTCTCCCTCCTCCCTT
CCATCCCTCGCTTTCTTCCTCTTCTTTCTTGCATCATCCCTCCAATGGACGAGCCGCGCC
CACCCGTCCTCCTCCCACGTCTATAAAGCCCGCCTGAAACCGACCCAAGCTGCTCGCCCG
CCCGCCCGCCAGCAAACCTTCCTGTCCACCTGCCTGCGTGCGTTGTTGTGCGTGCGTACG
TGGTGGTGGCAGGCGGAGCGATGGGAGGGACCGGCGGCGGCGGGGTCTGGCCGGTGGTGG
TGATGGTGTTCCTCAACGTGATCGCGGCGGTCATGGTGTCCCTCGTCAAGGTCGCCATGA
ACGGCGGGCTGGACCCGCTGGTGCTCGTGACGCTGCAGCAGCTCACCGCCGCATGCTTCC
TCGGCCCCATCGCCTTCTTCCGGGAAGGCAAGGCGCGGCCCAAGATGACGCTGGAGATCT
TCGCCTACCTCTTCGCCAGCGCGGCGCTGGGGGCGGCGCTGCGGCAGTACATGATCTTCG
TCGCGCTGCGGTACACCACGGCCACCTTCGTCACGGCCTTCTCCAACGTGGCCCCCGTGC
TCACCTTCCTGCTCGCCG

Homology of Contig U35_13238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None