- Probe CUST_1705_PI390587928
- Source Contig U35_26006
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1705_PI390587928 | Hv_44K_v2 | GGACAGATTAAGGTCTGTGTATGAATGAAGTGGTGGGGACTTTCTTTGGTTGGTAAAAAA | 431 | GeneList: turquoise MasterList: Reassembly_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.817 | 1.530 | 2.679 | 1.454 | 0.393 | 0.422 |
| Raw | 544.978 | 774.673 | 1156.882 | 981.545 | 93.627 | 111.352 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51028.1 | 3413 | 9e-22 | 3200 - 3254 | 100 | 55 / 55 | plus | None |
| MLOC | MLOC_51028.2 | 2131 | 9e-22 | 1918 - 1972 | 100 | 55 / 55 | plus | None |
| JLOC1 | JLOC1_32561.1 | 2267 | 5e-22 | 1901 - 1955 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_26006 | 502 | 3e-25 | 432 - 491 | 100 | 60 / 60 | plus |
Contig Sequence (502 bp)
>U35_26006 502 Hv_44K_v2 CCACGCGTCCGAAGACCACGGCGGCCACGCAGACCTTCCTGGGGCGGCCGTGGAAGGCGT ACTCGCGGGTGGTGTTCATGCAGTCGTACATCGGCGCCGTGGTGCGGCCGGAGGGGTGGC TCGCGTGGGACGCCAACCAGTCCACGCTCGCCACGCTNTANTACGGGGAGTACATGAACA CCGGGCCAGGCGCCGCCGGCGTCGGCGGCAGGGTGAGATGGCCGGGCTACCACCTGGCGA TGAGCCCCGCGGAGGCCAGCAACTTCACCGTTGCGCAGTTCATCGAGGGCAACATGTGGC TGCCGACCACGGGCGTCCGGTTCACGTCCGGGCTGCTCGCGTCTTAGATCCATCATCTCG CGAGTAGTCGCTTACTCGTCACATACGAGTAGTAGAGTACTTAACTTGGGGATGGTTGTG GTTCTTGAATGGGACAGATTAAGGTCTGTGTATGAATGAAGTGGTGGGGACTTTCTTTGG TTGGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_26006 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |