barSeed - Barley Seed Development Database

Probe CUST_17055_PI390587928

Source Contig U35_13243

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17055_PI390587928	Hv_44K_v2	TGGAATCAATGGTTGAATACTCAACACCAACTCGTGCAGAGGTGGCAGATGTTTCTGAAG	532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375629	2062	7e-23	1158 - 1217	98	59 / 60	plus	None
MLOC	MLOC_37559.3	1541	7e-23	824 - 883	98	59 / 60	plus	None
MLOC	MLOC_37559.1	1867	7e-23	958 - 1017	98	59 / 60	plus	None
MLOC	MLOC_37559.2	1870	7e-23	961 - 1020	98	59 / 60	plus	None
JLOC1	JLOC1_24325.5	1316	4e-23	365 - 424	98	59 / 60	plus
JLOC1	JLOC1_24325.4	1586	4e-23	635 - 694	98	59 / 60	plus
JLOC1	JLOC1_24325.3	1877	4e-23	926 - 985	98	59 / 60	plus
JLOC1	JLOC1_24325.2	1809	4e-23	858 - 917	98	59 / 60	plus
JLOC1	JLOC1_24325.1	1895	4e-23	944 - 1003	98	59 / 60	plus
Harvest21	ABC23606	604	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_13243	604	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_13243 604 Hv_44K_v2
TTGATAAGTGTCTCTGAAGGCATTCTAGTTGGTGATGAGCTTGTCATTGATGGTGGAATG
GCGACATTTGAAGTTACAGAGAAGATCGGGGGTGATCTGCGCTGTAAGTGCACAGACCCA
GGTTTGCTTCTTCCTCGAGCCAAGTTGTCATTCTGGAGGGACGGAAAATTAGTTGAAAGG
AACTTTGGGCTTCCTACATTATCGACAAAGGATTGGGCTGACATTGAATTTGGCATAACT
GAAGGAGTCGATTGTATTGCTCTTTCATTTGTAAAGGATGCTAATGACATTAAGTCCCTG
AAAACTTACCTCTCCAGAAGATCATTAGAACACATTAAGATATTCGCAAAGATCGAGAGT
CTGGAATCTCTCAAGAACCTTAAAGACATCATAGAGGCATCGGATGGAGTCATGGTTGCG
CGTGGTGATCTTGGAGTTCAGGTTCCTCTAGAACAAATCCCAGCCATCCAAGAGGCGATT
GTTGAATTATGTAGAAACCTGAACAAGCCTGTGATAGTTGCTTCTCAGCTTCTGGAATCA
ATGGTTGAATACTCAACACCAACTCGTGCAGAGGTGGCAGATGTTTCTGAAGCAGTGAGG
CAAT

Homology of Contig U35_13243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46910.1	549	2e-122	protein\|pyruvate kinase, putative, expressed
Brachypodium v1_2	Bradi1g12750.1	541	8e-124
Arabidopsis v10	AT3G22960.1	596	2e-87	\| Symbols: PKP1, PKP-ALPHA \| Pyruvate kinase family protein \| chr3:8139369-8141771 FORWARD LENGTH=596