barSeed - Barley Seed Development Database

Probe CUST_17050_PI390587928

Source Contig U35_25220

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17050_PI390587928	Hv_44K_v2	ATTCGTGGTGTAAATCAAACCTGACATCGTGTCAATAGCTCGGATTCGTGTAAACGGTAC	500	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.972	3.460	1.183	0.824	0.255	0.212
Raw	244.678	321.742	99.857	107.022	12.335	10.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4517.4	401	2e-24	301 - 360	100	60 / 60	plus	None
MLOC	MLOC_4517.1	1745	2e-24	1647 - 1706	100	60 / 60	plus	ABC08246
JLOC1	JLOC1_2818.2	1701	8e-25	1566 - 1625	100	60 / 60	plus
JLOC1	JLOC1_2818.1	1738	8e-25	1603 - 1662	100	60 / 60	plus
Harvest35	U35_25220	596	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_25220 596 Hv_44K_v2
ACAACACGCGGCGCCGCGACGGGTACCTGCCGATCGGCGAGCATGCTGGGCCGCCACGGC
GCCGTGCTCAAGTTCACCTGCGTGGAGATGCGCGACGAGGATCAGCCACGGGACTCTCGG
TGCATGCCCGAGGGCCTGGTGCGGCGTGTGGCCGCGGCCGCCCGCGGGGCCGGCGTCGGC
CTGGCCGGTGAGAACACGCTGCCCCGGTATGACGATGCGGCGTATGACCAGGTGCTGGTC
ACGGCTCGGGAGGAGCGGATGGTGGCGTTCACGAACCTCCGCATGGGCTCCGACCTGTTC
CAGCCCGACAACTGGCGCCGGTTCGCGGCGTTCGTGACGCGGATGAGCGAAGCCGGCTAG
TCCTCCTCGGCGCTGCCTTCCGGTAGGCTCACGCTCGGCGTCCACTGCGACGATGTTGCA
CGTCTTTTTTTTTAAAGTTCAATTTAAACCTTGATTTTGTATTGAATTAAAATCTCGATC
AATTACATCATAAACTATGCATTCGTGGTGTAAATCAAACCTGACATCGTGTCAATAGCT
CGGATTCGTGTAAACGGTACATTTTAATTTTTTTTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_25220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None