barSeed - Barley Seed Development Database

Probe CUST_17045_PI390587928

Source Contig U35_25225

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17045_PI390587928	Hv_44K_v2	TGATCCTAGAGGTGATGGGCTCAATGATAGAGAATTGATCTATGTTAGCAGCCGCTACGA	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81078.1	2490	2e-24	1973 - 2032	100	60 / 60	minus	None
MLOC	MLOC_81078.2	964	2e-24	577 - 636	100	60 / 60	minus	None
JLOC1	JLOC1_53950.1	1264	8e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_25225	1206	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (1206 bp)

>U35_25225 1206 Hv_44K_v2
CATCTGCCAAGATCACCGACAAGATGGAAACAAAGGAGGAGCAGGAAAGGGAGAGGGAGC
GGCTGAGGGAGAGGAGCAAGCAGAGGAAGGCGAATAGGGAGGCAAAGAGGAAGCAGATGC
TGCACAAGGAGCCCATTGTGGAGGAGGAGCAGTGCATTGTGGAGCACAAGGAGCCCATTG
TGGAGGAGGAGCACGCAGACGAGCAGGAAGCAAAACCCCCAAAGGAGCAACTTAAAGAAT
GGATGGATAACCATCTGGGATTTTTTGCAGGCTACCGTACAGACTGGGAATACTCGAGTG
GCAGCAAGCCGGGTCAGTGTGGTGAATTCGAAGATAAAACCACATTGAGTCCCATGCAGT
TTACGCACTGCATACCCGGTATCATCCCGCCCCGTGCCGCTGTCATTGAGAGCACCTTGC
AGATCTATTCCTTCAAAATTACAGGACTAAGTGACGACCTGAAGTGGCCACTCAATGTGT
ATGGTGTGATCGCTGCCCGAGACACCGTGGACCACAACCGCAACCTTCTCTTCTCTCGGT
CAAGTATTATGCGCCAAGTACTCACGTCTGAAAATGATTGTTCTCTGTGCTTGACTGGCC
CGTCTCGTGCTATTCTAGCCATGGACCCTGTTGATTTTGAAGTCGAACTAAGAGTACATG
ATGGTTGTGATCCTAGAGGTGATGGGCTCAATGATAGAGAATTGATCTATGTTAGCAGCC
GCTACGAGGTAGCACCCAGCGGTGAGCTTCCATGTTTAACCTTTCGCAGTCCGTTGTGTA
CAGCGAAGTTGAGCCTTGAACGACTTCCTAGTACGATACAGGCCACTAGCGGCCGCTCCG
GAGGCCGTCGCCCAGGACAAGGTCATCGCCGAGTTCCTCAACCATTGATTGCATCGTCTC
TTCACCATGTATACTCAGGAAATCGGGAAATAAGTGCGGCATCATCGTTCAGTTCATGGA
TGCTGCTTTAACATTTCGGGTTCAGAATTCAGATTAGTGTTGGTGCTGCTTGCCCTTTGT
TCAGGATTCAGGTATTGGGTTTACGGATGGAAGGGGATCGCCATTGTTTGTGACAATGGA
TGGCTGTATCAGAATTGTTGGAGGGTATATGGTACATTCATAGTTTCATACAGAGATGAT
ACTAGTAGTATACTTGGGAATTAGCGGCCGCTCGAGCATCTTCTGAAGGGCCCAATTCGC
CCTATA

Homology of Contig U35_25225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None