- Probe CUST_17044_PI390587928
- Source Contig U35_25226
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17044_PI390587928 | Hv_44K_v2 | AACACCTACGGATTTCGCAAGGTCGACCCGGACCTGTGGGAGTTCGCGCACGAGTCGTTC | 338 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.165 | 0.452 | 0.875 | 1.652 | 1.752 | 2.837 |
| Raw | 6.015 | 28.555 | 46.709 | 141.988 | 53.639 | 92.309 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63532.1 | 1658 | 7e-23 | 544 - 603 | 98 | 59 / 60 | minus | ABC32291 |
| JLOC1 | JLOC1_41623.1 | 1216 | 4e-23 | 356 - 415 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC22506 | 404 | 3e-25 | 339 - 398 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25226 | 404 | 3e-25 | 339 - 398 | 100 | 60 / 60 | plus |
Contig Sequence (404 bp)
>U35_25226 404 Hv_44K_v2 CACACACACACACGCACGCATAGGATAGGAGTGACTCCCCACAGAGAACAAGCCCACACC GAGCAGAGAGCAGGAAGAGCGAGCAGCTTCCTTATCCGGTTGCAGCTTCGTCGTCCATGG GAAGCGAGTGCAAGGGCCACCAGCACCAGGACGACGGCGGCGTCGCGCCGTTCGTGGCCA AGACGTTCCACATGGTCAGCGACCCGGCCACGGACGCCGTCGTGTGCTGGGGCGGCGCGA GCAACACCTTCCTCGTCCTCGACCCCGCCGCCTTCTCCGACTACCTCCTCCCCTCCTACT TCAAGCACCGCAACTTCGCCAGCTTCGTCCGCCAGCTCAACACCTACGGATTTCGCAAGG TCGACCCGGACCTGTGGGAGTTCGCGCACGAGTCGTTCCTGCGC
Homology of Contig U35_25226 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g53220.1 | 251 | 3e-53 | protein|HSF-type DNA-binding domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g48990.1 | 248 | 4e-56 | |
| Arabidopsis v10 | None |