barSeed - Barley Seed Development Database

Probe CUST_17041_PI390587928

Source Contig U35_25229

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17041_PI390587928	Hv_44K_v2	GATGAGGCCGCGGGCGTGGCCGACACGGCCGCTGCCAGGGAGGAGAAGGTGGAGGAGGCG	263	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358255	1715	2e-24	386 - 445	100	60 / 60	plus	ABC24637
MLOC	MLOC_77761.1	166	2e-24	15 - 74	100	60 / 60	minus	None
Harvest21	ABC23081	322	1e-24	264 - 322	100	59 / 59	plus
Harvest35	U35_25229	323	3e-25	264 - 323	100	60 / 60	plus

Contig Sequence (323 bp)

>U35_25229 323 Hv_44K_v2
TGCGCTCCCTGTTGCGCTCCCTGCTGGCCCTCCTCCCGAGGTGGAGATGGCCGCCGGCGG
AGGTGGAGATGGCCGACGGCGGCGAGGTCGTCCACACGCCCCACTCGGCGCCGCCTACGG
TGCCGTCGGCGCAGGTGTCGATCTGGGAGTCGGTGCGCGCGTGCGGGGTGTGGGGGCGGG
AGGTCNACAAGGCCGACCTGCGGCGCCGCGTCGTCATGCCGCTCTACGCGCACCGGGCCA
TGGCCGTCGCCGTCGCCGAAAAGGATGAGGCCGCGGGCGTGGCCGACACGGCCGCTGCCA
GGGAGGAGAAGGTGGAGGAGGCG

Homology of Contig U35_25229 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None