- Probe CUST_17039_PI390587928
- Source Contig U35_37202
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17039_PI390587928 | Hv_44K_v2 | ATCGATAACGTCTGCATTGAGGCGCTGAGCGTCAGCGTTCGCAAGCAGACACTGGATGGT | 443 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.262 | 1.375 | 0.927 | 1.130 | 0.950 | 0.846 |
| Raw | 23.954 | 12.291 | 9.218 | 16.198 | 3.637 | 3.340 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66388.8 | 2666 | 2e-24 | 841 - 900 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.4 | 2508 | 2e-24 | 864 - 923 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.7 | 2796 | 2e-24 | 822 - 881 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.2 | 2931 | 2e-24 | 875 - 934 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.1 | 2657 | 2e-24 | 880 - 939 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.6 | 2718 | 2e-24 | 843 - 902 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.3 | 2818 | 2e-24 | 875 - 934 | 100 | 60 / 60 | plus | ABC19511 |
| MLOC | MLOC_66388.5 | 2553 | 2e-24 | 844 - 903 | 100 | 60 / 60 | plus | ABC19511 |
| JLOC1 | JLOC1_43741.5 | 2774 | 8e-25 | 875 - 934 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43741.4 | 2839 | 8e-25 | 875 - 934 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43741.3 | 2843 | 8e-25 | 875 - 934 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43741.2 | 2785 | 8e-25 | 890 - 949 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43741.1 | 2768 | 8e-25 | 890 - 949 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32908 | 529 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37202 | 529 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus |
Contig Sequence (529 bp)
>U35_37202 529 Hv_44K_v2 GCCCGCCCGAGGCCTCGCGCTCCCTCCTCGCGCTCGGACTCTCCTCCCGCAAGAACCTCT GCGTCCACCCCCAGGCCTCCGCCTCCGCCGCCCGCGATTCCGTCGACACAGCCTGCCGCC GCCTGACGGCGTCCTGGGTCCGCGACAAGGCGGCCTCCGACCCGGAGTCGACCCCTCTCT GCGAATTCTTCGAGTCATTCGACCGGGCCGCGGCCGCCGGCGACCTCTCTTCTTTCATGC CCCCTGGGGTCTACACTCTCGCCGACCTCCGTTCGCTCGGCCGTGAGCGTCGGATATGCC CCTACTTCCTCGCCAGGCAGATGGTCAAGTACGCCAATGTGGTGGTCTACAGCTACCAGT ACCTGCTCGACCCAAAGGTGGCCAGCATTGTGTCCCGGGAGATGCAGAAGGAGTGCGTGG TCGTGTTTGATGAGGCGCACAACATCGATAACGTCTGCATTGAGGCGCTGAGCGTCAGCG TTCGCAAGCAGACACTGGATGGTGCCGAGCGAAACTTGAGGCGCATCTC
Homology of Contig U35_37202 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g05260.1 | 759 | 5e-98 | protein|helicase, putative, expressed |
| Brachypodium v1_2 | Bradi2g36360.2 | 736 | 3e-101 | |
| Arabidopsis v10 | AT1G03190.1 | 758 | 8e-62 | | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775822-779863 FORWARD LENGTH=758 |