- Probe CUST_17038_PI390587928
- Source Contig U35_37203
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17038_PI390587928 | Hv_44K_v2 | CTATGCTGCGCTAGCTAGATCGATCACCATTTAGTTTAGATGATGGATGAAGGGTGAAAA | 564 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.027 | 0.023 | 0.160 | 3.718 | 13.766 | 25.890 |
| Raw | 3.015 | 3.648 | 43.357 | 1553.840 | 1911.123 | 4021.180 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_35423.1 | 828 | 7e-23 | 632 - 691 | 98 | 59 / 60 | plus | ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367 |
| MLOC | MLOC_32822.1 | 915 | 7e-23 | 579 - 638 | 98 | 59 / 60 | plus | ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367 |
| MLOC | MLOC_24844.1 | 1226 | 3e-21 | 430 - 489 | 97 | 58 / 60 | minus | ABC01460 ABC01461 ABC01464 ABC01470 |
| JLOC1 | JLOC1_22865.1 | 824 | 4e-23 | 628 - 687 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_21353.1 | 769 | 4e-23 | 566 - 625 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_17059.1 | 1169 | 2e-21 | 375 - 434 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC01461 | 723 | 3e-25 | 565 - 624 | 100 | 60 / 60 | plus | ABC01461 |
| Harvest21 | ABC01470 | 718 | 1e-23 | 557 - 616 | 98 | 59 / 60 | plus | ABC01470 |
| Harvest21 | ABC01464 | 748 | 6e-22 | 570 - 629 | 97 | 58 / 60 | plus | ABC01464 |
| Harvest21 | ABC01463 | 675 | 6e-22 | 570 - 629 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_37203 | 624 | 3e-25 | 565 - 624 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14429 | 718 | 1e-23 | 557 - 616 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14424 | 759 | 1e-23 | 570 - 629 | 98 | 59 / 60 | plus |
Contig Sequence (624 bp)
>U35_37203 624 Hv_44K_v2 GCACAAACATAAACATTGAAGCGCGAGCTTGTAGCTCCCGCAAAAAGAAAGCAAGAGCCA AACACCATGAAGACCATGTTTATCGTCGCTCTCATCGGCCTCGCGGTGAACAACTCTGTT GCGCAACTGGACACTACCTGCATCCAGGGCTATGGGCAATGCCAGCAGCAGCCGCAACAG ATGAACACATGCGCTGCTTTCCTACAGCAGTGCAGCCCGACGTCATATGTACAATCACAG ATGTGGCAGGCAAGCGGTTGCTAGTTGATGTGGCAGCAGTGTTGCTAGCCGCTGGCCCAG ATCTCAGAGCAGGATAGGTGCCAGGCCGTCTGTAGCGTGGCACAGGTCATCATGCAGAAG CATCAGCAACAGCAAGGGCAAAGTTTTGGCCAGCCTCAGCAGCAGGTCCCGGTTGAGATA ACGAGGATGGTGCTTCAGACCCTTCCGTCGATGTGCAGGGTGAACATCCCGCAACATTGC GTCGACACCCCGTGCAACACCATCACTCAGAGCTCCTACAACATCCCTATGGCCGCTACG TGTGTTGGTGGTACCTGCTAAGATCTATGCTGCGCTAGCTAGATCGATCACCATTTAGTT TAGATGATGGATGAAGGGTGAAAA
Homology of Contig U35_37203 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |