barSeed - Barley Seed Development Database

Probe CUST_17033_PI390587928

Source Contig U35_13252

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17033_PI390587928	Hv_44K_v2	TGCTGGTGCAGTGCAAGTCGATTAAATGTCTTCTTGTAAGCCATCGGCCAGCATATGATT	503	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.774	2.571	1.059	1.082	0.381	0.533
Raw	50.431	78.076	27.074	43.187	2.957	7.382

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71305.3	701	2e-24	489 - 548	100	60 / 60	plus	None
MLOC	MLOC_71305.2	916	2e-24	664 - 723	100	60 / 60	plus	None
MLOC	MLOC_71305.1	966	2e-24	754 - 813	100	60 / 60	plus	None
JLOC1	JLOC1_47385.1	701	8e-25	535 - 594	100	60 / 60	plus
Harvest21	ABC21501	563	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_13252	563	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_13252 563 Hv_44K_v2
GTGAAGTGGCTCCTTCTCTTGCCTGCTCTGCTCTTCTACTCATGGTCTTGCAGCAGCGTG
CCGGCGAGGATGACGAGACCACCCCACTCTCCGGCGACCGGCCCTTCTTCACCGTCGTCA
TGTGCAAGACCCATGTCCAGAAGCCCTATCTGCTGATCATCCCGACTCACTTCCAGCGCC
GGCTGCCTGCAAGGCGTACGGCGGTGGTGCTCCGGTGCCGTGGGAGCTCGTGGATCATGA
GCTACTCTGGCCACACCAAGCTGAAGAACCTCGCCGCAGGCTGGGCGGACTTTGCCATCG
ACAATCGGCTGCAGGTCGGAGATGGGTGCGTGTTCGAGCTGTTGTCCGGGGATGCTAGAG
ATGGCGGTGAGGGGGAGGTGGTGCTGGAGGTGCAGGTGCTTCGAGGTTACCTGCCGGAGC
CGGAGGATCTCGCCACCAAAGGAGAAAGTGCCGACGAGCCCATGGCCAACTATCATTGTT
AGCGAGAGCTAGGCTTCACTTGTTGCTGGTGCAGTGCAAGTCGATTAAATGTCTTCTTGT
AAGCCATCGGCCAGCATATGATT

Homology of Contig U35_13252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None