barSeed - Barley Seed Development Database

Probe CUST_17026_PI390587928

Source Contig U35_25230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17026_PI390587928	Hv_44K_v2	GCGCCCGAGGGCGTGCGGAGGCCGCTGCCGGGGAAGGTGCATATCCTTACGGCTGGCGCG	235	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367399	1984	2e-24	974 - 1033	100	60 / 60	plus	ABC19947
MLOC	MLOC_67330.2	1737	2e-24	456 - 515	100	60 / 60	plus	ABC19947
MLOC	AK371126	2131	7e-23	1109 - 1168	98	59 / 60	plus	ABC19947
JLOC1	JLOC1_44445.2	1651	8e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_25230	295	3e-25	236 - 295	100	60 / 60	plus

Contig Sequence (295 bp)

>U35_25230 295 Hv_44K_v2
CGTGGTCACCATGGACTCGCTCGTCTCCTGGTCCGTGCCGGAGCAGCCGACGTACCTGTG
GACGCTGCCCATGTTCCACGCCAACGGCTGGAGCTTCCCGTGGGGGATGGCCGTGGTGGG
CGGCACCAACGTCTGCCTCCGCCGCGTCGACGCCGCCGAGGTCTACGACACCATCGCCCG
CCGCGGGGTCACGCACCTCTGCGGCGCGCCAGTCGTGCTCAACATGCTGGCCAACGCGCC
CGAGGGCGTGCGGAGGCCGCTGCCGGGGAAGGTGCATATCCTTACGGCTGGCGCG

Homology of Contig U35_25230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57850.1	559	3e-58	protein\|AMP-binding enzyme, putative, expressed
Brachypodium v1_2	Bradi5g26000.1	577	4e-51
Arabidopsis v10	None