barSeed - Barley Seed Development Database

Probe CUST_17023_PI390587928

Source Contig U35_25233

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17023_PI390587928	Hv_44K_v2	CATCCAGGACGCCCCCAATGGCTACTCCAGGGTGGTGTGGGTGGAGCACATGGAGGTGGT	218	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52077.3	3626	2e-24	1646 - 1705	100	60 / 60	minus	ABC43075
MLOC	MLOC_52077.1	3769	2e-24	1646 - 1705	100	60 / 60	minus	ABC43075
MLOC	MLOC_52077.2	3975	2e-24	1646 - 1705	100	60 / 60	minus	ABC43075
JLOC1	JLOC1_33321.1	3731	8e-25	2003 - 2062	100	60 / 60	plus
Harvest21	ABC21991	278	3e-25	219 - 278	100	60 / 60	plus
Harvest35	U35_25233	278	3e-25	219 - 278	100	60 / 60	plus

Contig Sequence (278 bp)

>U35_25233 278 Hv_44K_v2
GCTCTCATTCTGATGCAAGCGGAGGTGCAGTTCCTGTCTCCTCTGGTGCCGGCGCGGGAG
GTGGTCTTCTTCCGGTACTGCGTGCACAACGCCGACGAGGGGACCTGGTCCATCGTCGAC
TTCCCAGCGGACGGCTTCCAGGAGGAGCTTCTTCAGCAGCAGCAGCAGCAGCAGGCCAGC
TCGCTGGTCCGGTGCCGGCGCCGGCCCTCCGGCTGCATCATCCAGGACGCCCCCAATGGC
TACTCCAGGGTGGTGTGGGTGGAGCACATGGAGGTGGT

Homology of Contig U35_25233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None