barSeed - Barley Seed Development Database

Probe CUST_16995_PI390587928

Source Contig U35_25246

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16995_PI390587928	Hv_44K_v2	TGATCTCGACGGGTTCAAGCGCTACGTCATCTATGTCCTCGACAAAATCTGCACCAGGTT	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251131.1	1132	2e-24	419 - 478	100	60 / 60	plus	ABC43077
MLOC	MLOC_61964.1	912	2e-24	379 - 438	100	60 / 60	minus	ABC43077
JLOC1	JLOC1_40526.1	1064	8e-25	474 - 533	100	60 / 60	plus
Harvest21	ABC22617	481	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_25246	482	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_25246 482 Hv_44K_v2
ACAGACCAGAGCAGTTCGAGCGCCACCGTCGAAGCAGGAATGGACTGCGGTACTGATGAT
GCGCACCAACACGGCCATGGCCATGGCAATGACGACGGCGGCGATGCGGCGGAGTGGAAG
AAGGTGGCGGAGCTGAGGGCCGTGGTCGAGGCACAGGACCCCGCAGCCAAGGAGGAGGAC
GACCTCGCGCTCCGGCGGTTCCTGCGTGCCCGGGACCACAACATCGGCAAGGCGTCGGTG
ATGCTCCTCCACTACCTTGCCTGGAAACGCGTCGCCAAACCCCATGGCTCGATCTCGGAC
GACGAGGTGCGTGACGAGATCGCAAAGGATAGGGTCTGCATGGAGGGCTTCGACCGTCTC
AACCGCCCCATGGCGTATCTCTATGGCGCGCGCCATTTTCCCGCCCGGCGTGATCTCGAC
GGGTTCAAGCGCTACGTCATCTATGTCCTCGACAAAATCTGCACCAGGTTGCCGGTGGGG
CA

Homology of Contig U35_25246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g01630.1	253	8e-51
Arabidopsis v10	None