barSeed - Barley Seed Development Database

Probe CUST_16978_PI390587928

Source Contig U35_3652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16978_PI390587928	Hv_44K_v2	TGAATGTCACCGTCACAATGGCGGTGTTACTAAACATAATACTCCCTCCATATTGGATGG	1485	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	21.283	18.671	1.593	0.474	0.865	0.532
Raw	262.321	352.392	24.881	12.095	7.181	4.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61338.2	1220	2e-24	18 - 77	100	60 / 60	minus	ABC08049
MLOC	MLOC_61338.1	1357	2e-24	24 - 83	100	60 / 60	minus	ABC08049
JLOC1	JLOC1_40077.2	1872	8e-25	1663 - 1722	100	60 / 60	plus
JLOC1	JLOC1_40077.1	2016	8e-25	1807 - 1866	100	60 / 60	plus
Harvest21	ABC08049	1571	3e-25	1486 - 1545	100	60 / 60	plus	ABC08049
Harvest35	U35_3652	1571	3e-25	1486 - 1545	100	60 / 60	plus

Contig Sequence (1571 bp)

>U35_3652 1571 Hv_44K_v2
CAGCCATTGAACCCCTCTCCTCTCCTCTCCTCTCCGCGTCAAATCCACCCCGGCGTCCGT
TGTCCGGAAGCCCCACCAGCTCGGCGCGCCGCACGTGCGTACGCATACCGCGTCGGTGGA
CCGATCAATGGCCCTGCTCAAGGCCGCGCGCGTCGCCGACGTGCCCACCCTCGACGTCGT
CGTGCCGGACCACCTCGCCGCCGCCGCGCGCGTCCGCCTCGACGCGGAGTCGGCGGCGAC
GACGAAGAAGCAGCAGCGCGGCGCGGGGCGGCGGTTCGCGGTGATCGGGCACCGGGGCAA
GGGGATGAACGCGCTGGCGTCGCCGGACCGGCGGCTGCAGGAGGTCAAGGAGAACTCTGT
CCGGTCCTTCAACGAGGCGGCGCGCTTCGCCGTCGACTACGTCGAGTTCGACGTGCAGGT
GACCAAGGACGGCTGCCCAGTCATCTTCCATGACGACATCATCCTTACTGAAGAACATGG
CAAAATTTCAGATAAGCGTGTCACTGATCTTCAGTTGGAAGACTTCCTCCAGTATGGCCC
ACAAAATAAGCAAGGAAAGAATGGAAAGCCTTTGCTGCGGAAAATGAAGGACGGTCGGGT
GTTGAATTGGAACGTCCAGTCAGATGATCCCCTTTGCACCCTTCAAGAAGCATTCGAGAA
GGTCACTCCAAGATTGGGCTTCAATGTCGAGCTGAAGTTCGATGACCATCTTGCATACGA
AGAGGAAGAGCTCACTCACATCCTCCAGGCCATCCTCAAGGTTGTCTTCGAGTGTGCCAA
GGATAGGCCTATCATCTTCTCTAGCTTCCAGCCCGATGCTGCGCAACTCATGCGAAAACT
GCAGAGTACATACCCAGTGTACTTCTTGACGAACGGAGGGACGGAGATCTACGCCGACGT
GCGGAGGAATTCGTTGGAAGAGGCGGTCAAGCTGTGCCTCTCCACTGGCATGCAAGGGAT
CGTGTCCGAGGCCCGCGCAGTCTTCAGGTTTCCGACCGCCATACCGATGATCAAGGAGGC
TGACCTCTCCCTACTAACTTACGGGACACTCAATAACGTGCCGGAGGCAGTGTACATGCA
GCACCTCATGGGGGTGAACGGGGTGATCGTCGACCTCGTGCCGGAGATCACGGGGGCCGT
CTCTGACCTCATCTCCTCCCCGGAGACCGACACGGAGATCAATGATCTGAGCAGCCAAGT
GGTGAAAGATGCCGCGTCGACGCCGAATTTCACGCAGCGGGAGATTTCATTCCTGCTGAG
GCTGATGCCGGAGCTTGTGCAATAACACAGATTGCACCCCGTTCATGGCCTTGGATGTAA
CTGACTGATTGGCATACAGGAAGAGGAGCCACTTGTGGAGGGAAGTACAAGTATACGTAC
TGGGTGGGTTGGTGTGCTTCGGTGAGCTCTCTCCCTGGAGAATTGGGAATTGGGGATTGA
TTTATACATGTTGTAGCGAGGGTGATGATTTTTTTGGATATACAGTGAATGTCACCGTCA
CAATGGCGGTGTTACTAAACATAATACTCCCTCCATATTGGATGGGAGCACAAAAAAAAA
AAAAAAAAAAA

Homology of Contig U35_3652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g31030.1	388	0.0	protein\|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2	Bradi3g44290.1	380	0.0
Arabidopsis v10	AT3G02040.1	361	5e-138	\| Symbols: SRG3 \| senescence-related gene 3 \| chr3:348505-349909 REVERSE LENGTH=361