barSeed - Barley Seed Development Database

Probe CUST_16977_PI390587928

Source Contig U35_3653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16977_PI390587928	Hv_44K_v2	CTGGCTCGGAGCCTATTTATTGTAAAAATGTCAGTCAGGTTGAATAAATAAATGTTCATG	416	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.137	0.279	1.316	2.439	1.240	1.346
Raw	4.467	16.693	70.720	194.264	39.820	45.366

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51487.1	506	5e-22	433 - 490	98	57 / 58	plus
Harvest21	ABC10179	546	3e-25	417 - 476	100	60 / 60	plus	ABC10179
Harvest21	ABC10181	496	2e-22	418 - 475	98	57 / 58	plus
Harvest21	ABC10180	476	2e-22	398 - 455	98	57 / 58	plus
Harvest35	U35_3653	546	3e-25	417 - 476	100	60 / 60	plus
Harvest35	U35_3655	580	2e-22	448 - 505	98	57 / 58	plus
Harvest35	U35_3654	476	2e-22	398 - 455	98	57 / 58	plus

Contig Sequence (546 bp)

>U35_3653 546 Hv_44K_v2
GCATAAATCAACTCAAACTGATAACCAGCCCCCTGTCATAGGTCATCAGCCCCCTGTCAT
AGCGTGTACAATGGCTTCCTTGGCAAGATCTGCTCGTCTTCTCGCCATCATGTTCCTCAT
CGTTGCCGCGGTGATGATCACGACCAGCCCCATCGTAGAATGCGCGATCAATTTCGATCC
CAACGCCGGCGAACGGCTCAAGAAGGATATAGAGCGCCCCCACTGAATGCAATGGTGTCA
CCCGAGCAGGAGGTGGTGGTGAGGGCCACCACGGAGAAATCCCTCAGTCTTAATGATGGC
TATCTCTATTGCAATCTGATGTGCCAAAATTAAACAATAATAATAAATGGATAGAATTAG
TGCCTCGGTATGTATGCATGCACATAGGGAATCAAATTTGTGAGTACCAAATCCAGCTGG
CTCGGAGCCTATTTATTGTAAAAATGTCAGTCAGGTTGAATAAATAAATGTTCATGTTAA
TAGATTTCAGTACTCCTTCTCTTGGAAATTATTTATTTATCTATAAAAAAAAAAAAAACG
CCGTTG

Homology of Contig U35_3653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None