barSeed - Barley Seed Development Database

Probe CUST_16976_PI390587928

Source Contig U35_3654

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16976_PI390587928	Hv_44K_v2	CTGGCTCGGTGCCTATTTATTGTAAAAATGTCAGTCAGGTTGAATAAATAAATGTTCAAG	397	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.068	0.266	1.359	2.749	1.124	1.420
Raw	4.168	37.363	155.014	451.213	75.772	99.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51487.1	506	8e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC10181	496	3e-25	418 - 477	100	60 / 60	plus
Harvest21	ABC10180	476	3e-25	398 - 457	100	60 / 60	plus
Harvest21	ABC10179	546	2e-22	417 - 474	98	57 / 58	plus	ABC10179
Harvest35	U35_3655	580	3e-25	448 - 507	100	60 / 60	plus
Harvest35	U35_3654	476	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_3653	546	2e-22	417 - 474	98	57 / 58	plus

Contig Sequence (476 bp)

>U35_3654 476 Hv_44K_v2
AAGCATAAATCAACTCGAACTGATAACCAGCCCCTTGTCATAGCGCGTACAATGGCATCC
TTGGCAAGATCTGCTCGTCTTCTCGCCATCATGTTCCTCATCGTTGCCGCGGTGATGATC
ACAACCAGCCCCATCATAGAATGCGCGATCAATTTCGATCCCAACGCCGGCGAACGGCTC
AAGAAGGATATAGAGCGCCCCCACTGAATGCAATGGTGTCACCCGAGCAGGAGGTGGTGG
TGAGGGCCACCACGGAGAAATCCCTCAGTCTTGATGGTGGCTATCTCTATTGCAATCTGA
TGTGCCAAAATTAAATAGTAATAATAAATGGATAGAATTAGTGCCTCGGTATGTATGCAT
GCACATAGGGGATCAAATTTATGAGTACCAAATCCAGCTGGCTCGGTGCCTATTTATTGT
AAAAATGTCAGTCAGGTTGAATAAATAAATGTTCAAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None