barSeed - Barley Seed Development Database

Probe CUST_16969_PI390587928

Source Contig U35_3661

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16969_PI390587928	Hv_44K_v2	GATAAGGTGGTATTTTCAACCATGAAAAAGGTGGATATGATTACACCGGTCTCAGAAAAA	3519	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12212.4	2838	2e-24	2732 - 2791	100	60 / 60	plus	ABC13512 ABC37697
MLOC	MLOC_12212.5	2844	2e-24	2738 - 2797	100	60 / 60	plus	ABC13512 ABC37697
MLOC	MLOC_12212.2	2849	2e-24	2742 - 2801	100	60 / 60	plus	ABC13512 ABC37697
MLOC	MLOC_12212.3	2837	2e-24	2730 - 2789	100	60 / 60	plus	ABC13512 ABC37697
JLOC1	JLOC1_8188.4	2895	8e-25	2741 - 2800	100	60 / 60	plus
JLOC1	JLOC1_8188.3	2892	8e-25	2738 - 2797	100	60 / 60	plus
JLOC1	JLOC1_8188.2	2883	8e-25	2729 - 2788	100	60 / 60	plus
JLOC1	JLOC1_8188.1	2887	8e-25	2733 - 2792	100	60 / 60	plus
Harvest21	ABC13512	1525	3e-25	1466 - 1525	100	60 / 60	plus	ABC13512
Harvest35	U35_3661	3579	3e-25	3520 - 3579	100	60 / 60	plus

Contig Sequence (3579 bp)

>U35_3661 3579 Hv_44K_v2
ACCACCATTCCGCGCCAACTACCACCATGCCGCATGACCGCGAAACCCCGGTCTCCCCTG
CCATTCCATCCCACCGCCCGTCTCATTCCCCTCCGTCCACCCGCCAGCCCGCCTAACACG
GCGCAAGGGGGGAGAGAGAGAAAACCCTCTTCAAACCCTAGGGAACTCAATGTATGCAAA
TTCCAAACCTTGAAGAATTGATCTACCACTCTTAGCTGCTAACTGTTCGCCTGGTGGAGA
TAATGATGGAAAGAGAGGACAGATATGTTAGATTTCAGGACTGCAAATCAGAGCAATCTG
TTATCTCAGAGAACGCAGTTTCACCACGCAGACATTGTGTATTTAGATCACTTAAAGAAA
GAACTGGTGGATTATTTGCATTTCTTGGAAACTTTTTGCGTTCTGAAACCTTGAAGAGAT
CAATGCTGGAAGACCGGAAGTCCATGCAAAATGTTTTTCACCCTCAAGGACCATTTCTGC
AAAGATGGAACAAGATATTTGTATTATCATGTATTTTTGCAGTCTCTGTGGACCCATTGT
TCCTCTATATCCCGGTTATCAATGATAAAAATCTTTGCTGGTATTTGGATAGGAAGATGA
AAATCACTGCAAGTGTCCTGCGCTCTTTCACAGATATATTTTATATACTCCATATCATAT
TCCAATTTCGGACAGGCTTTATCACGTCTTCCTCTACAAATTTTGGTAGGGGTGTATTGG
TCGAGGATAGATATGCTATAGCAAAGCGGTATCTGTCAACATATTTTCTGATTGATGTCT
GTGCTGTTTTACCCCTCCCTCAGGTGGTCATTTGGATTGTCCTGCCAACTCTTCAGGTCT
CACAGTTCATGAAAGCCAAAAACATCTTGATGCTTATAGTTATATGCCAATATGTACCTC
GGGTAATCCGAATAAGGCCATTATATCTTCAAATCACTAGATCTGCTGGGATAATTACAG
AGACAGCATGGGCTGGTGCTGCCTTCAATCTAATAATTTACATGCTTGCCAGCCATGTCC
TTGGAGCAGTTTGGTACTTGCTTTCTATTCAACGCAAAGATGCCTGCTGGAAACAGAATT
GCAGTCTTACTAGAGACTGTAATCCTGCATATCTATACTGTGGGAATGGTGGTACAAATG
CTGGAAATGCTTTCTTGCAGAATGTTTGCGTTCCAAATATAACCAAAGACAATCTTCCGG
ACCCACTCTTTGGAATCTTTGTGCCAGCTATAAATAATGTTTCGCAGTCAACAGATTTCT
TCGCGAAATTATTTTACTGTGTCTGGTGGGGTCTGCAAAATCTCAGTTCGCTTGGCCAAA
ACCTAAAAACAAGCACTTATGCTTGGGAGAATTTGTTTGCAGTTTTTGTCTCAATATCCG
GCTTAGTTTTGTTCTCACTTCTGATCGGTAATATGCAGACATATTTGCAGTCAGCTACTC
TGAGAATAGAAGAAACGAGAGTGAAAAGCCGCGACACAGACCAATGGATGTCATATCGGC
TTCTTCCTGATAACCTCAAGGAGCGAATACGGCGTTATGAACAATATAGATGGCAAGAGA
CAAGCGGGGTTGATGAAGAGCACCTCCTGATGAACCTCCCCAAGGATCTTAGAAGGGCTA
TAAAACGACATCTTTGTTTATCACTTCTCAAGAGGGTTCCAATGTTTGAAAAAATGGATG
ATCAGCTCTTGAATGCCTTGTGCGACTGCCTAAAGCCTGTTTTGTACACAGAAGGTGGCT
GCATTGTTCGTGAGGGTGATCCAGTAAATGAAATGTTCTTTATCACGAGAGGAAACCTCA
TGAGCATGACAACAAACGGTGGAAAAACTGGCTTTTTCAACTCTGACGTTCTGAAAAGCG
GAGATTTCTGCGGCGAGGAGCTTCTTACCTGGGCTCTTGATCCCAACTCGGCAACCAGTC
TCCCCAGCTCAACTAGGACGGTGAAGTCAATGTCTGAAGTCGAAGCCTTTGCTTTGATGG
CTGAAGACCTGAAGTTTGTGGCCATGCAATTTCGACGGCTACACAGCAAACAGCTCCGGC
ACACCTTCAGGTTCTATTCACAGCAGTGGAGAACCTGGGCCGCCTGTTTCATACAAGCAG
CCTGGCACAGGCGCTGCAGAAAGAAGATGGAAGATGCTCTGCGCGAGAAGGAGGAGAGAC
TGCAACTCGCGATTGTGAACGATGGCTCCACTTCGCTCAGCTTCGGTGCGGCCATATACG
CTTCACGTTTTGCTCGCAACATGATGCGGACCTTGAGGAGAAATGCCACCCGGAAGGCCC
GGCTGCAGGAAAGGGTGCCTGCAAGGCTGTTACAGAAGCCAGCAGAACCCAACTTCTCCG
CAGAGGAGCAGTAGTTTGCATGAGTGCCTTGATAGTGTTATTTTCTGCACGATCTGTGCG
GTTGCATCGCTGATGTTGCTTACGGTGTTCGCTAGCGGTTCAAAGGCGAGCCAGGGGATC
GCAGTAGCGTAGCGATTCAATGATGATATGTTGCTACCTGGTCTAGACAGTAACACTAGG
CAATGGTGTGATGTGATTAGTGATCTGGTCTTGTGTATAACATTGTGCATAATGAGCGCA
GCCCAGTCCTCTTTATGTTGCCACCCGAGAATGCAACATAGTCCCCCACTATGAGAGTAG
CTGATAAGTATGTTTACGCCCAGATATAAACTCGTATGTGGACTTGCATGAGTACAGAAT
AAATGGATTCTTACATTATTTAGCGGCCGCTCCATCCTTGCAGTCTGTTGACATGGCAGC
TGGGGGGTCTCAGCAGCTTGTAGTAGAAAACCTGGAGTCTGACTCCTCATCTGAACTTGC
TGACACAGGAGATGAAGGATTCCAAGTATCCGTCTCAGACAATGCAGATGGTAGCTCCTC
CTCAGCGCTTGCAGATTCAGATGATGGGTACAAGAATTCCCAGTCTGGCAATGAGGAAGC
TAGTTCATCCTCAGAGGGTACTGAACCCGAAGACGAGGAGTTTCCAGCTGAAGCCATATT
TACTGCAGAAGATCTGGCTTTCATGATATCCCTTGGCTGGAGTAAAGATGAAAAAGTGCA
ACCTTTGGGTTTGGAGGAAATTGCTGATTATGTGAGGCGCCATAAGGGGCTGGAGCAGAG
GCTTTTCTCCATGGAAGGCAATGCGGACATCAAGATAGTTCTCCTTTATCTTTGCGGTCA
GAGCTAAATGAAAGGTTGAAAAAGCCTAGAGTACAGGAAGCCACAGTTTGCAAAATGCAA
TGGCTAGTCACATCTTTTGATGCTGAGAACTGATAGCAAAGAGTCCTTGGCATGAGTTTT
GTCTAGATTAACAAGTCGAGATTTTTTCCCTGATGACTCTGGTCTATCAACTTGGGAGGT
GGTTCACAAGTAGTTCTGACAATTTTTGGCATGTTGGAAAATGAGGTTAGGATTTATCAT
ATTTTTCCCAGGAGTACCAAATGTAGGTCCTGTCCTGCTGCCCTTTGAAAAATAGGTTAC
TTTTTCCCCTCGTCAGGTCTTATCTTTATTTTCGAAAAGGATAAGGTGGTATTTTCAACC
ATGAAAAAGGTGGATATGATTACACCGGTCTCAGAAAAA

Homology of Contig U35_3661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g33570.1	695	protein\|cyclic nucleotide-gated ion channel 1, putative, expressed
Brachypodium v1_2	Bradi1g38680.1	704
Arabidopsis v10	AT5G53130.1	716	\| Symbols: CNGC1, ATCNGC1 \| cyclic nucleotide gated channel 1 \| chr5:21537830-21540490 REVERSE LENGTH=716