barSeed - Barley Seed Development Database

Probe CUST_16968_PI390587928

Source Contig U35_3662

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16968_PI390587928	Hv_44K_v2	AATGGAAAGTGTTTCTGTGAAGAAGCAAATTCTTCCGAGGGATCTCAGCGGCACCATTCA	599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12212.1	2526	2e-24	1774 - 1833	100	60 / 60	plus	ABC13512
MLOC	MLOC_12212.4	2838	2e-24	1866 - 1925	100	60 / 60	plus	ABC13512 ABC37697
MLOC	MLOC_12212.5	2844	2e-24	1872 - 1931	100	60 / 60	plus	ABC13512 ABC37697
MLOC	MLOC_12212.2	2849	2e-24	1876 - 1935	100	60 / 60	plus	ABC13512 ABC37697
MLOC	MLOC_12212.3	2837	2e-24	1864 - 1923	100	60 / 60	plus	ABC13512 ABC37697
JLOC1	JLOC1_8188.4	2895	8e-25	1875 - 1934	100	60 / 60	plus
JLOC1	JLOC1_8188.3	2892	8e-25	1872 - 1931	100	60 / 60	plus
JLOC1	JLOC1_8188.2	2883	8e-25	1863 - 1922	100	60 / 60	plus
JLOC1	JLOC1_8188.1	2887	8e-25	1867 - 1926	100	60 / 60	plus
Harvest21	ABC13512	1525	3e-25	600 - 659	100	60 / 60	plus	ABC13512
Harvest35	U35_3662	1018	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (1018 bp)

>U35_3662 1018 Hv_44K_v2
CAGTTATGCAAGCTCCTCAGAGAACTTCGTCTGGACCTCAGTTATCAATTGATGCTCAGA
AGATTGAAGAAAGAACTTTGAGACAAAACACTCTAAGACCCATGACTTCTACAACAAGCA
AATCTTCTGTAACAAGCTCTTCCAAATCAAAAGGAACACGGATTGGAGATCTTGCTGGTA
CTAGTAAGGCCATACAACAATCATTAGCACTTCCCGCCAATGGTTCTGTTCGAGCTCCAG
CCAAAACAGAGCTTTCAAAGCTTACTCTTTCAGGAAGCTTTAAAATCCTCAGCCGAGAGC
AAAATTGTACTGCACAGACTCCTAAAGACTCTCCAGGCAATCCTGCGAGTCCTCCATCTC
GTGTGGCTTCCATGGAACCACATAAGAAGCCTCCTCTCGTCCAAAAGCCCAAGGTTTCCA
CACATGATCTTCCTCTAGTGCAAGGTTCATCTGTTGGCAAATCAAGATTAAAATTCTTCG
AGTCACTTCGAACCAAATCTTCAAGTTCAGCTGTTGAGTCAGGTTGTGAGCCATCTCCAT
CCAGCGGAGTTGATGCAAAGCATGATTCTTGTCTTGATTCTGGAATGAAATGCATGGGGA
ATGGAAAGTGTTTCTGTGAAGAAGCAAATTCTTCCGAGGGATCTCAGCGGCACCATTCAG
ACAGTGAGGAGAACAATCCATCCTTGCAGTCTGTTGACATGGCAGCTGGGGGGTCTCAGC
AGCTTGTAGTAGAAAACCTGGAGTCTGACTCCTCATCTGAACTTGCTGACACAGGAGATG
AAGGATTCCAAGTATCCGTCTCAGACAATGCAGATGGTAGCTCCTCCTCAGCGCTTGCAG
ATTCAGATGATGGGTACAAGAATTCCCAGTCTGGCAATGAGGAAGCTAGTTCATCCTCAG
AGGGTACTGAACCAGAAGACGAGGAGTTTCCAGCTGAAGCCATATTTACTGCAGAAGATC
TGGCTTTCATGATATCCCTTGGCTGGAGTAAAGATGAAAAAGTGCAACCTTTGGGTTT

Homology of Contig U35_3662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35860.1	658	7e-84	protein\|expressed protein
Brachypodium v1_2	Bradi3g46380.1	629	3e-127
Arabidopsis v10	None