barSeed - Barley Seed Development Database

Probe CUST_16966_PI390587928

Source Contig U35_3664

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16966_PI390587928	Hv_44K_v2	CTTAAGCATTTTCCTTTTTGCTTCTGAATCTGGAGCTATAATAATCTAGCTGGCCGTTTG	1267	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.173	0.339	1.063	2.264	1.526	1.151
Raw	4.734	16.839	49.050	158.034	38.559	32.200

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22455.1	1385	8e-25	1286 - 1345	100	60 / 60	plus
Harvest21	ABC10415	1148	3e-25	22 - 81	100	60 / 60	minus	ABC10415
Harvest35	U35_3664	1348	3e-25	1268 - 1327	100	60 / 60	plus

Contig Sequence (1348 bp)

>U35_3664 1348 Hv_44K_v2
GCTTTTGGCGCAGGCGCAGAACCGTGCGTCGTCCTGTAGCCTCGCCACCAACCGGTTCAT
CAGCCAGTGGCACACTAGCTCGCGCAGAGCAAGTACGCAGTGCGCAGCGCGCACGCTCTC
CTCCCAATCTTAAGTAGAAAACGAGGTAGCTGCCTGCGGCCTACCTCACCACACCACACC
GAGACGACAGGCTTCTTCCCACCGGACGTGCGCAGGATCGCGACTGCCTAGCTACCCAGA
GCTTGGAGAATCCTTACTCCTGCCAGCTGAGCTCTCCGGTGCTTCTCTTCCTTCCTTCCA
GCATCTCGGCCGATCTTGGCTGTTTGCTCTGCGTCTTGGTACGTAACGTAGGGGCTCGCT
CATGGAGGCGGCGCTGGTTCTGGTGGCGGCGGCGGCGCTCCTGCTGTCCCCGGCTCTTGT
CGCCTCAGATTTCTGCGTGTGCCGGTCGGACCAGCCGACGGCGGTGCTGCAGAAGGCGAT
CGACTACGCGTGCGGGCAGGGCGCCGACTGCACGGCCATCGAGCAGAGCGGGGCGTGCTA
CAGCCCCGACGAGGTCGCCGCGCACTGCTCCTGGGCCGCCAACAGCTACTTCCAGAAGTT
CAGGTCCTCCGGCGCCACCTGCGACTTCACCGGCGCCGCCACCCTCTCCACCACCGACCC
CAGTTTCTCCGGGTGCACGTTCCCATCCAGCGCCAGTGCCGCCGGCACCACCACCGGAAC
CGCCGGCACCACTACGGGAACCGGGACGACCACCACGGGCACCGGGACGACCACGGGGGG
CACCTTCAGCCCCGGGATGGGCACCGGGTTCAACAGCACCGGGCTCAACGGCACCGGGTT
CAGCCCGGGGACCGGGAGCATGGACGGCACCGCCGCGGCAGCCGGCTTGCTTCCGTCGAT
GAGACTGGCGGCCTCCATCGCCATCCTCCTCCTCTGCTACTTGGCACTACCATGAAGTCT
GTGTGTCTGTCTTTTCTCATGGCAGGAACACATCAGCTAGCTTCAGTGGCCTTGTGGTCT
GGTGTGCTAGAAGCAAGCTGAGAGTGTGGATTTTGTGTAATGGAATCCATCGATCTGGAG
ACCTGATCGTCGTTATTGTTCCCTAGTGTCATGGGCTAGCTGGGGGCGTCATTTTGGTTC
TAGTTTAATTTTAATTTATGGCCTCCCACAGGCTGGTGGTGTATGATTTGGTAGGATGGC
TGTCTCTTTCCCTCTGCAAGGACCCTTGTCTTCCTTGTCTGTTTTTATACTGTTGGCTAC
TCTTAATCTTAAGCATTTTCCTTTTTGCTTCTGAATCTGGAGCTATAATAATCTAGCTGG
CCGTTTGATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None