barSeed - Barley Seed Development Database

Probe CUST_16955_PI390587928

Source Contig U35_3678

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16955_PI390587928	Hv_44K_v2	TATTTTTCCCTGAGATACTGTAATTGAGGAACCGTGTGCTGCGACGGGACACTGTATTTG	1728	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.255	1.298	1.191	0.937	0.358	0.347
Raw	10701.840	17380.273	13933.100	17120.990	2322.140	2439.367

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81613.2	1924	2e-24	1801 - 1860	100	60 / 60	plus	ABC06657 ABC08943
JLOC1	JLOC1_54283.1	2151	8e-25	1785 - 1844	100	60 / 60	plus
Harvest21	ABC08943	1866	3e-25	1729 - 1788	100	60 / 60	plus	ABC08943
Harvest35	U35_3678	1852	3e-25	1729 - 1788	100	60 / 60	plus

Contig Sequence (1852 bp)

>U35_3678 1852 Hv_44K_v2
CCTCTCTCGCGCCGCACGCACTCCTCCCCCTCGACCTCGTCGCCGACGCCGCGATGCCGG
AGGACGTTGAGATGAACGACTCCGCTCAGCCCGCCCCCGCCGCCGCTCCCGCGGCCGCCG
ACGCGCCCGCGCCCGCGCCCGCTCTCTCCACCCTGCAGCATCTGAAGGAGATCGCGTCCG
TGGTCGAGGCGGGGTCGCTGACCAAGGAGGTCCGCCGGATCTCCCGCGCCATCCGCCTCA
CCGTCGCCCTCCGCCGCCGCCTCGCCGCCCCAGACGTCGCGGCCTTCCTCGCCTTCGCGC
TGCCCCCTTCCTCCGAGGCCTTCACCCGCCTCTCTCCGCTCCTCCCCAAGGAAGATGGAA
GTGAGATGGATGTTGATGCTGCAGCTCCAGCAGCTCAAGTTTCAATCAAGCATGGACTCC
CAGAGATTGAAATATACTGCTACCTGCTTGTGTTGATTTTCCTTATTGATCACAAGAAAT
ATGATGAGGCTAAAGCATGTGCGAACTCTAGCATTGCTCGTTTGAAGAATCTCAACAGGA
GGACTGTTGATGTTTTGGCTTCTAGGCTGTATTCGTATTACTCGTATGTCCATGAACTCA
CCAACAGCCTTGCTGAAATTCGTGGAACTCTCCTTGGGTTGCACAGGATGGCAACTTTGC
ACCATGATGAGCTTGGGCAGGAAACTCTTCTTAACCTGCTTCTTCGCAATTACCTGCACT
ACAACCTATATGACCAGGCAGAAAAACTTAGGTCAAAGGCACCGCGTTTTGAAGCACATT
CCAATCAGCAGTTCTGCCGCTATCTGTTCTACTTGGGAAAAATTAGAACAATTCAGCTCG
AATACACTGATGCTAAAGAGAGCCTCTTGCAAGCTGCACGGAAAGCACCCACTGCAGCTC
GTGGATTCCGCATCCAGTGCAACAAATGGGCTATACTAGTAAGGCTACTTTTAGGGGAGA
TACCAGAGAGAACTGTTTTCATGCAGAAAGGAATGAAGGCGGCTTTGACACCATATTTTG
AGCTTACAAATGCTGTTCGCGTTGGGGACCTAGAAGTGTTCAGAGTTGTTGCAGATAAAT
TTGGGAGCACTTTTAGTGCTGACAGGACATCCAATTTGATCGTGAGGCTGCGCCACAACG
TCATCCGGACTGGATTGCGCAACATTAGCATTTCCTACTCACGGATCTCCCTTGCCGACA
TTGCCAAGAAACTGAGGCTAGATACTAAGACCGCTGTTGCTGATGCTGAGAGCATTGTAG
CCAAGGCCATTAGAGATGGGGCAGTTGATGCCACCATCGATCATGCCAATGGTTGGGTGG
TGTCGAAAGAGACTGGCGACGTGTACTCAACAAACGAGCCACAGGCTGCTTTCAACTCCA
GGATTGCATTCTGCCTGAACATGCACAATGAGGCCGTCAAGGCTCTGAGGTTCCCCCCGA
ATTCTCACAAGGAAAAGGAGAGTGCCGAGAAGAGGCGAGAGAGGCTCCAGCAGGAGGAAG
AACTCGCGAAGCACATGGCCGAGGAGGATGACGATGACTTCTAGGTTGGTTATCCTCTCT
TGGTGCTTTCAGCTGCTGCATGTTCCATTACGGAGAAGCGAGGACTACAAAGTTGATGTT
AGGAGCCACACTCCGATTTCGTTGAGGGACAATTTAAATGATGCTATTACTCTGTGGTTT
TCTATGCTCCCAACAATTCTTTTATCACTACAAATTGCGTAGAAACCTTATTTTTCCCTG
AGATACTGTAATTGAGGAACCGTGTGCTGCGACGGGACACTGTATTTGGCATCGCATCCT
GTATTTGCTTTGCGGGAAGTTGATTTGAGGATAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g37000.1	488	protein\|26S proteasome non-ATPase regulatory subunit 3, putative, expressed
Brachypodium v1_2	Bradi4g36700.1	498
Arabidopsis v10	AT1G20200.1	488	\| Symbols: EMB2719, HAP15 \| PAM domain (PCI/PINT associated module) protein \| chr1:7001409-7004154 REVERSE LENGTH=488