barSeed - Barley Seed Development Database

Probe CUST_16954_PI390587928

Source Contig U35_3679

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16954_PI390587928	Hv_44K_v2	TCTTGCGTTGGTGAGGATGGTCATTTACAGACCAGCAAATGGGTAAATCTGTATGATGCT	1729	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.973	1.383	1.319	0.874	0.671	0.582
Raw	540.295	471.338	491.802	438.789	137.202	131.612

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55623.1	4481	2e-24	1351 - 1410	100	60 / 60	plus	ABC06680 ABC06681
MLOC	MLOC_55623.2	4645	2e-24	1515 - 1574	100	60 / 60	plus	ABC06680 ABC06681
JLOC1	JLOC1_35907.3	4116	8e-25	1174 - 1233	100	60 / 60	plus
JLOC1	JLOC1_35907.2	4585	8e-25	1428 - 1487	100	60 / 60	plus
JLOC1	JLOC1_35907.1	4339	8e-25	1326 - 1385	100	60 / 60	plus
Harvest21	ABC36064	392	3e-25	333 - 392	100	60 / 60	plus
Harvest35	U35_3679	1789	3e-25	1730 - 1789	100	60 / 60	plus

Contig Sequence (1789 bp)

>U35_3679 1789 Hv_44K_v2
TGTCATCAAACACAGAGGAGGTTTCACTTTCATGAGGCTATGCTTGAAATACACGACCAT
ATGCATGATGTGTGGAAGAGACGTGATGATGGCAAGTCTATGGAATCAAGTGCTTTCAGT
TGGATATCAGGCCTCCCTTTCGATGCAAAAATTAAGGAATGGCTGATCGGGGAGGAAAAG
TACAAACAAGATAAACATCAAAAACATATTCTGTTAGCTGTCGCTGACAAGTTCCTTGTC
GATAGACAAGCAAATAAATGTGGTGCAAGCATTCTATGCTTTGATGAGATACAGACTATT
GATGTATTCGCTATTGTTGCCCTATCTGGTATTCTGAGCAGACTATTAAGCACTGGGACT
GTGCTTGTTGCTACCAGCAATAAAGCACCGGAAGATCTGAATCAGGATGGGATGCAACGA
GAAATCTTCCTTGAGTTATTATCTAAGCTAGACGAGACCTGCAATAAGATTCTTGTTGGA
ACTGAAACGGATTATCGCCGCCTTATTCCTACGGATGGCTCAACTCAGATTCACTATTAT
TGGCCGACCAATCCTGACACAAGGAGTATGTTTGAGGCTATGTGGCATGACATAACTAAC
CAGGCAGGCGGAAACATAACTGCAGTTACTATTCCTGTAATGTTTGGAAGGTCTATTGAG
ATTCCTCAAAGTTGTAGCGGTGTAGCAAGGTTTGACTTCGAGTATTTATGTGGACGCCCA
GTCGGAGCTGCAGATTATATAGCAATAGCCAGGAACTACCATACAATTTTCATATCAGAC
CTTCCAGCTATGAGTATGAAGATCCGTGACAAGGCAAGAAGATTCATCACCCTTATTGAT
GAGATGTACAATCATCACTGCCGCCTTATATGTTTAGCTACCTTACCCATTGATAATCTG
TTTCAAGGAACTGAGGAAGGGCCTCTTTTTGATTTAGAGAGTTTCCAGTTTGAAACTGAA
GCGGAAGGGTCAAAGTTAAGGAGGGATGTTTCCGCAGAAGGCAATGTTGGTGTAGGACCC
TCTACTAAAGGTCTAGTGTCAATGCTGTCTGGTCAAGAAGAGATGTTTGCGTTCCGAAGG
GCGATATCTCGGCTCATAGAAATGCAGACCCCGTTGTATCTCGAGCGTGTCCAGCATGTC
CATTCTTCTGGGCTTCAACAACAGCAGGGCGCCCCTGTTCTCACAAAACAGAGCACTGTC
TCTCAGTCTGCTCCCTTGTAGACTTGGTAGTACCATTCTATTCGTTCCTGTAAAAATAAT
CTCGGAAACGTCGGGGAATGAGGTTGGAGAAGCCAAGCTCGACATTGTCGGAAACTGTAT
CGAGTATATGTATGTAACACAAGTGATATCAGCAAGACACCCCGTTGCATCTGCGCAAAT
TTGCCAACAACCGCTCCAAAGGATCCATGAGTGCCCTGGTCTACTGGATGCATTGATGAG
GGCAGAAATGTTACTGGACAAGAAAGTTGTGGAAAAATTGCATGAGTTGCTGTTGAAGCT
TATCGCTGAACCGGCTTTTAAGTATGAGTTTGCTAAAGTTTTCATACAGTACTACCCTGT
TGCATTTTCTGAAGTTATTGAAGGGGGCAATGACTATGTGCTGGAGGAGTATCTGCTGAT
ACCGAACTTTTCTGTCCAAATATTTACCGTGCCTATGCTGACTACAATGCTTGTGCGCGA
TCACAATTTGTTGGGTATTCTTCTTGAATGTTTGACAGCTCTGTTTCTTTCTTGCGTTGG
TGAGGATGGTCATTTACAGACCAGCAAATGGGTAAATCTGTATGATGCT

Homology of Contig U35_3679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63500.1	614	0.0	protein\|ATPase, AFG1 family domain containing protein, expressed
Brachypodium v1_2	Bradi1g01420.1	614	0.0
Arabidopsis v10	AT2G25530.1	655	2e-178	AFG1-like ATPase family protein \| chr2:10863059-10866597 FORWARD LENGTH=655