- Probe CUST_16948_PI390587928
- Source Contig U35_3685
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16948_PI390587928 | Hv_44K_v2 | GGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGAT | 1561 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.185 | 1.257 | 1.072 | 0.933 | 0.395 | 0.535 |
| Raw | 614.927 | 1014.635 | 767.116 | 1062.337 | 154.436 | 230.820 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61671.9 | 1219 | 2e-24 | 1138 - 1197 | 100 | 60 / 60 | plus | ABC08814 |
| JLOC1 | JLOC1_40302.21 | 3006 | 8e-25 | 2906 - 2965 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.20 | 3703 | 8e-25 | 3603 - 3662 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.19 | 3514 | 8e-25 | 3414 - 3473 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.18 | 3302 | 8e-25 | 3202 - 3261 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.17 | 3093 | 8e-25 | 2993 - 3052 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.16 | 3138 | 8e-25 | 3038 - 3097 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.15 | 3446 | 8e-25 | 3346 - 3405 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.14 | 3093 | 8e-25 | 2993 - 3052 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.13 | 3275 | 8e-25 | 3175 - 3234 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.12 | 4025 | 8e-25 | 3925 - 3984 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.11 | 3943 | 8e-25 | 3843 - 3902 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.10 | 3367 | 8e-25 | 3267 - 3326 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.9 | 3232 | 8e-25 | 3132 - 3191 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.8 | 3472 | 8e-25 | 3372 - 3431 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.7 | 3671 | 8e-25 | 3571 - 3630 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.6 | 3415 | 8e-25 | 3315 - 3374 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.5 | 3456 | 8e-25 | 3356 - 3415 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.4 | 3612 | 8e-25 | 3512 - 3571 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.3 | 3477 | 8e-25 | 3377 - 3436 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.2 | 3612 | 8e-25 | 3512 - 3571 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40302.1 | 3382 | 8e-25 | 3282 - 3341 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08814 | 1650 | 3e-25 | 1561 - 1620 | 100 | 60 / 60 | plus | ABC08814 |
| Harvest35 | U35_3685 | 1651 | 3e-25 | 1562 - 1621 | 100 | 60 / 60 | plus |
Contig Sequence (1651 bp)
>U35_3685 1651 Hv_44K_v2 GAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTC ACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCA TCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCA CCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCT CCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATAC GGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGT ACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCG CAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACC ACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCC ACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGC GGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCT GTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTA GGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGT ACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCA CTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGCAGAGCAATCTGTTTACATG GTAATTGGTAAGGCTTAAGACAAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAG GAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGAT GGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCC CTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCA AAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAG CTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTG TACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTG AACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCC TGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAG GATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATT ACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAAGGAAAAATGTGCCTTGTTAAATGG TGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGA TTTTAGGTTGTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_3685 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g19470.3 | 695 | 4e-110 | protein|WW domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g43210.1 | 863 | 2e-137 | |
| Arabidopsis v10 | None |