barSeed - Barley Seed Development Database

Probe CUST_16942_PI390587928

Source Contig U35_3691

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16942_PI390587928	Hv_44K_v2	TAACGCCCGATGTTATGCATCTGTGGATTATCGGCTGATATGTTACGTGATCTTTAACAT	1230	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.218	1.301	1.124	0.861	0.375	0.502
Raw	549.316	895.199	697.073	820.488	130.468	186.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64607.2	2702	2e-24	29 - 88	100	60 / 60	minus	ABC09340 ABC09341
JLOC1	JLOC1_42442.5	2722	8e-25	2614 - 2673	100	60 / 60	plus
JLOC1	JLOC1_42442.4	2770	8e-25	2662 - 2721	100	60 / 60	plus
JLOC1	JLOC1_42442.3	2663	8e-25	2555 - 2614	100	60 / 60	plus
Harvest21	ABC09340	1290	3e-25	1231 - 1290	100	60 / 60	plus	ABC09340
Harvest21	ABC51000	535	8e-21	484 - 535	100	52 / 52	plus
Harvest35	U35_3691	1290	3e-25	1231 - 1290	100	60 / 60	plus

Contig Sequence (1290 bp)

>U35_3691 1290 Hv_44K_v2
ATTGTAGCACCTTCAATGTCCGAGGGCTTCCGTAGCATTGTTCAGACGATGGGCCTAGGT
AATTTGAAGCCTAATATTGTTGTGGTGCGGTACCCTGAGATTTGGCGCCGTGAGAATCTG
ACAGAGATACCATCAACCTTTGTCAGTATAATAAATGATTGCATCATTGCTAACAAGGCA
GTTGTTATTGTGAAGGGTCTTGATGAGTGGCCTAATGAGTTCCAGAGACAGTATGGTACT
ATTGACCTCTACTGGATTGTGAGAGATGGAGGATTGATGCTTCTTCTGTCTCAGCTCCTG
CTCACAAAAGCGACCTTTGAAAGCTGCAAGATCCAAGTCTTCTGCATAGCTGAAGAGGAC
ACTGATGCTGAAGAGCTAAAGACTGATGTCAAAAAGTTTTTGTATGATCTTAGGATGCAT
GCCGAGGTCATTGTTGTGACTATGAAGTCATGGGAATCTCATGTGGAGAGCAGCAGCAGT
GGTGCTCAGCCAGATGATTCCCAAGAGGCTTACACAAGTGCACGGCGCAGGATCAGCACA
TACCTTTCAGAGATGAAGGAAACCACACAAAGAGAAGGACGGCCGCAAATGGTGGATGGG
AAGCAAGTTGTTGTGAACGAGCAAAAGGTCGATAAATTCCTCTATACAATGTTGAAGTTA
AACTCGACGATACTCAGGTACTCCAGAATGGCAGCTGTGGTGCTAGTGAGCCTCCCTCCG
CCACCGCTGAATCACCCTGCATACTTCTACATGGAGTACATGGACCTGCTTGTAGAGAAC
GTCCCACGCATGTTGATAGTTAGGGGATACAGAAGAGATGTTGTCACATTTTTTACTTGA
TCAAATACGTACAGTCTGAGCTCCATCCAGTTGTTGTGCCATTGTAGCAGAATGAATACA
CAGATGTGTGCAGATTCCACTGCTGAAGTTGGAAGCCCTCACCTTGACGGCTACCTTAGA
TGGGATGCACTGGGTTGTCACTGCCATATTAGGTACGTAAACCATAGATCTTCATTCCTT
TTCAGGACACAACAGATGAATACTTGGTCACTACAAATTTTGTAGCCCTGTTCTCCAAAT
CAATTCTAGAAACTTCCATTTTTTTTCCCACTGAAACAGTAGCAACAGTGTCCCTGTTTT
TGCTATTTTCTGTGATTTGTATACGGCTGAGAGACTGCAACAAGTTGTTGGAAGGAGCAA
TACCAATGCTATAAGTAGAGAATATTCTGTTAACGCCCGATGTTATGCATCTGTGGATTA
TCGGCTGATATGTTACGTGATCTTTAACAT

Homology of Contig U35_3691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23440.1	990	2e-143	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi1g51807.1	994	3e-152
Arabidopsis v10	AT1G30450.1	975	2e-120	\| Symbols: CCC1, ATCCC1, HAP5 \| cation-chloride co-transporter 1 \| chr1:10762905-10769061 FORWARD LENGTH=975