barSeed - Barley Seed Development Database

Probe CUST_16941_PI390587928

Source Contig U35_3692

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16941_PI390587928	Hv_44K_v2	CCTTAGATGAGATGCACTGGGTTGTTATTGTCATGTTAGGTACGCAAAATATAGTGTCTT	933	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63120.1	1813	7e-23	1532 - 1591	98	59 / 60	plus	ABC09340 ABC09341
JLOC1	JLOC1_41335.1	1904	4e-23	1606 - 1665	98	59 / 60	plus
Harvest21	ABC09341	1053	3e-25	61 - 120	100	60 / 60	minus	ABC09341
Harvest35	U35_3692	1053	3e-25	934 - 993	100	60 / 60	plus

Contig Sequence (1053 bp)

>U35_3692 1053 Hv_44K_v2
TCTGAGGGGCTTCCGCAGCATTGTTCAGACGATGGGCCTAGGGAACTTGAAGCCAAATAT
TGTTGTGGTGCGGTACCCTGAAATTTGGCGCCGTGAGAATCTGACAGAGATACCGTCAAC
ATTTGTGAGTATAATTAACGATTGCATCATTGCTAACAAGGCAGTTGTTATCGTGAAGGG
TCTTGATGAGTGGCCTAATGAGTTCCAGAGACAGTATGGGACTATTGACCTATACTGGAT
TGTGAGAGATGGAGGGTTGATGCTTCTTCTGTCTCAGCTCCTGCTCACAAAGGCGACCTT
TGAAAGCTGCAAGATCCAAGTCTTCTGCATAGCTGAAGAGGACACTGATGCTGCAGAGCT
AAAGACTGATGTCAAAAAGTTCTTGTACGATCTTAGGATGCATGCCGAGGTCATTGTTGT
GACTATGAAATCATGGGAATCTCACGTGGAGAACAGTAGCAGTAGTGCTCAGCCAGATGA
TTCACAAGAGGCTTACACGAGTGCGCGGCGAAGGATCAGTGCATACCTTTCCGAGATGAA
GGAAACCACAGAAAGAGAAGGCCGGCCGCAGATGGTGGATGGGAAGCAAGCTGTTGTGAA
CGAACAAAAGGTCGATAAATTCCTCTACACAATGTTGAAGTTGAACTCCACGATACTCAG
GCACTCCAGGATGGCAGCTGTGGTGCTGGTGAGCCTCCCTCCGCCACCGCTGAACCACCC
TGCATACTTCTACATGGAGTACATGGATATGCTTGTAGAGAACGTCCCACGCATGTTGAT
AGTCAGGGGATATAGAAGAGATGTTGTCACATTTTTTACTTGATCAAAATACATACAGCC
CGAGCCCCATTCTGTTGTCGTGCCACCGTAGCACAGAATGGATACACAGATCAGATTCCA
TTGTTCTAGTTGGAAGGCCTACCTCGGTGGCTACCTTAGATGAGATGCACTGGGTTGTTA
TTGTCATGTTAGGTACGCAAAATATAGTGTCTTCATTCTTTACACATCAGATGAATACTT
GGTCATTACAAATTTTGTACCCCTGTTCTCCAT

Homology of Contig U35_3692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23440.1	990	2e-134	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi1g51807.1	994	5e-144
Arabidopsis v10	AT1G30450.1	975	4e-114	\| Symbols: CCC1, ATCCC1, HAP5 \| cation-chloride co-transporter 1 \| chr1:10762905-10769061 FORWARD LENGTH=975