barSeed - Barley Seed Development Database

Probe CUST_1692_PI390587928

Source Contig U35_14038

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1692_PI390587928	Hv_44K_v2	GTCGATGATATGGTCCTGTGATATTGATTACCAGTTCGAAAATTGCAATGGATGTCATTC	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19873.1	333	2e-24	137 - 196	100	60 / 60	plus	ABC00676
JLOC1	JLOC1_13777.1	315	8e-25	137 - 196	100	60 / 60	plus
Harvest21	ABC00676	635	3e-25	554 - 613	100	60 / 60	plus	ABC00676
Harvest35	U35_14038	651	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_14038 651 Hv_44K_v2
CCCAACAAGAAACCACCGCCCAGGCCGCCGCCGATCCCCAGCCAGCTCCGATGGCCCGCA
CGAAGCAGACGGCGCGCAAGTCCACCGGCGGCAAGGCGCCGCGGAAGCAGTTGGCTACCA
AGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGTTTCCGCC
CGGGGACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCC
GCAAGCTCCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTGC
GCTTCCAGAGCTCCGCCGTCTCGGCCCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGC
TCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTGACCATCATGCCCAAGG
ACATCCAGCTCGCCCGCCGCATCCGCGGGGAGCGCGCGTAGGCTCGCAATGCTTCCTGCC
GCCATGGTTCCTTCTTGGTTGGCCCCGAGGGGATTGTTTCGTCCTGTTATCGTAGTCCAC
CTGTGCTTCGAGTTGTTATTAGGTTCTAGTCGATGATATGGTCCTGTGATATTGATTACC
AGTTCGAAAATTGCAATGGATGTCATTCATTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14038 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	6e-81	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-81
Arabidopsis v10	AT5G65360.1	136	2e-81	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136