- Probe CUST_16920_PI390587928
- Source Contig U35_20713
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16920_PI390587928 | Hv_44K_v2 | AGGCGTCCAAGCTAGATAGAGGAGAGCACGGTGCGGCATGGGCGCCGGGATTAGGATCTT | 209 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.150 | 0.279 | 3.187 | 3.610 | 1.388 | 1.543 |
| Raw | 5.810 | 18.607 | 191.460 | 324.919 | 49.752 | 57.287 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375700 | 1451 | 2e-24 | 182 - 241 | 100 | 60 / 60 | plus | ABC13657 |
| MLOC | MLOC_57775.3 | 1419 | 2e-24 | 1037 - 1096 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_57775.2 | 1719 | 2e-24 | 985 - 1044 | 100 | 60 / 60 | minus | ABC13657 |
| MLOC | MLOC_57775.1 | 2914 | 2e-24 | 2309 - 2368 | 100 | 60 / 60 | minus | ABC13657 |
| JLOC1 | JLOC1_37500.1 | 1745 | 8e-25 | 322 - 381 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13560 | 311 | 3e-25 | 210 - 269 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20713 | 311 | 3e-25 | 210 - 269 | 100 | 60 / 60 | plus |
Contig Sequence (311 bp)
>U35_20713 311 Hv_44K_v2 GAAAGCTTGGCTTCTACTACTACTACTCCAACACAATAACAACGCCACCCACAAACACAC CCGCAGCCGCGGCGACAGACACCCAACGGCTCCGTCATCATCGCCACCACCACCACCGCT TCTTCTAGATAGCTCGCGGTGCCGTCATTAGCCGCTGGAGCAGAGCAGAGCCTCGACGAG TCCCACATCGGTCAGGCATCCAGGCAGGGAGGCGTCCAAGCTAGATAGAGGAGAGCACGG TGCGGCATGGGCGCCGGGATTAGGATCTTGGCGGTGGCGCTCCTGGCGCTCGCGGCGGCC GGCGGCGCGAC
Homology of Contig U35_20713 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |