barSeed - Barley Seed Development Database

Probe CUST_16914_PI390587928

Source Contig U35_20719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16914_PI390587928	Hv_44K_v2	ACTGAATCTGACACTGCAACATTGATCCCAAACAGTGGAAGCTTAGAAGGTTCAAGCAGG	212	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5021.6	3029	2e-24	168 - 227	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_5021.5	2830	2e-24	237 - 296	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_5021.3	2799	2e-24	206 - 265	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_5021.2	2944	2e-24	344 - 403	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_5021.7	3044	2e-24	168 - 227	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_5021.4	3565	2e-24	689 - 748	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_5021.1	3221	2e-24	345 - 404	100	60 / 60	plus	ABC08301 ABC08302
JLOC1	JLOC1_3201.4	2897	8e-25	105 - 164	100	60 / 60	plus
JLOC1	JLOC1_3201.3	3533	8e-25	655 - 714	100	60 / 60	plus
JLOC1	JLOC1_3201.2	2757	8e-25	218 - 277	100	60 / 60	plus
JLOC1	JLOC1_3201.1	3010	8e-25	218 - 277	100	60 / 60	plus
Harvest21	ABC19128	422	3e-25	118 - 177	100	60 / 60	plus
Harvest35	U35_20719	612	3e-25	213 - 272	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_20719 612 Hv_44K_v2
TCGGTAGGCACATTGTCATCCCACCCCCAGGGAAGCAAAGCCACCTGCATCTGCAAGCCT
GGTTCTCTCTGCTGGTGGAGTCCCGCGAAATGCTCCGGGTTCCAATCGCAATCAGTGGCT
GAAATCCCTCCCTGGCTTAAGAGAGGAGGAATTGTTCCGGGATTAGGTAAAAGAAGAAGG
ACATGGCTGACATTGAAGCTGGCAAGCCAGCCACTGAATCTGACACTGCAACATTGATCC
CAAACAGTGGAAGCTTAGAAGGTTCAAGCAGGGCCACAAAGACCACCAGGTTCAAAGACG
ACGACGAGGTCGTCGAGATCACGCTCGACGTGCAGCGGGATGCGGTGTCGGTCCAAGGCG
TCAGGCCGGTGGCCGCGGAGGCTGCGGTGGCCGCCGCGAGGAAGAGATATGACAGGAGCA
AGAGCACCGCTGCGGTGGCGCTCAAGGGCCTGCAGTTTGTGACTGCCAAAGTTGGCGGCG
ACGGCTGGGCCGCTGTGGAGAAGCGGTTCAACCACCTGCAGGTTGATGGCGTCCTGCTCC
GTTCCAGATTTGGGAAATGCATTGGCATGGATGGGTCCGACGAGTTCGCGGTGCAGATGT
TCGACTCGTTGG

Homology of Contig U35_20719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None