barSeed - Barley Seed Development Database

Probe CUST_16912_PI390587928

Source Contig U35_18401

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16912_PI390587928	Hv_44K_v2	CCCGTATGTTGAGGTGAAGCTCGGGAATTATAAGGGCACAACTCGGCATTTTGAAAAGAA	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248690.1	3053	2e-24	661 - 720	100	60 / 60	plus	ABC13100
MLOC	MLOC_64185.1	3162	2e-24	2423 - 2482	100	60 / 60	minus	ABC13100
JLOC1	JLOC1_42112.1	3452	8e-25	783 - 842	100	60 / 60	plus
Harvest35	U35_18401	740	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (740 bp)

>U35_18401 740 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGGCTCTCCCTCACTCTTCCACACTCTTCCCACTCTCACCC
GCCCCCCACCCTCGCTTATCCCTCTCAGCTCTCGCCTAGGGTTCTTGCCGAGGAGAAAAC
CCGAGAGATCGATCCATGAGGGCGGGGACCGCCGGCGGGGAGCTGCTCCGGCGTGCAGAT
CCGGTGGTCGGCCACCTCAGGATCTGCTGAAATCCTTCAGCATTGCTCCCTTGCTCCTGT
TCTCCGACTCCCGGCCAACCTCTGCGGATTGCGAGTATCTCCCCCTCCGATTCCGTCCTT
TTCGGGATCCTCCTCGTGAATCAGGTCGCATGCTGGAATCTGGTGGAGAATTTTCTCACG
AAATGTTCGGTTGAAAGCGACCTTGCCTGAATTGTTGATTGCAAAGCCATTCTGGGGAAT
CAGTCATTGTTGGCTGTATCTTTCTTCCTTTCCGACCCTGAGTAGGAATTGTTTGGTTCA
AGACTGTCATTCAAGATGATGCAGAGGCCATTCCGCCCGGAGGAGTACTCCTTGAAGGAG
ACTACTCCTCACCTTGGTGGGGCAGCTGCAGGTGACAAGCTCACCACCACCTATGACCTG
GTTGAGCAGATGCAGTACCTTTATGTTCGAGTGGTAAAAGCGAAGGAACTTCCAAGTAAG
GACCTCACTGGAAGTTGTGACCCGTATGTTGAGGTGAAGCTCGGGAATTATAAGGGCACA
ACTCGGCATTTTGAAAAGAA

Homology of Contig U35_18401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None