barSeed - Barley Seed Development Database

Probe CUST_16905_PI390587928

Source Contig U35_23360

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16905_PI390587928	Hv_44K_v2	ACAGGGTTTGCAAGTGAAGGAAGGAATAAAGGCTTACGGTTCGTGTTTTGCTGCAAAAAA	602	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.433	0.892	1.222	1.140	0.826	1.267
Raw	467.034	1520.094	1794.727	2675.791	669.081	1129.617

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357204	2398	3e-22	2198 - 2253	100	56 / 56	plus	None
MLOC	MLOC_82092.1	2385	3e-22	60 - 115	100	56 / 56	minus	None
JLOC1	JLOC1_54602.3	2427	1e-22	2265 - 2320	100	56 / 56	plus
JLOC1	JLOC1_54602.2	2430	1e-22	2268 - 2323	100	56 / 56	plus
JLOC1	JLOC1_54602.1	2001	1e-22	1839 - 1894	100	56 / 56	plus
Harvest35	U35_23360	673	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_23360 673 Hv_44K_v2
GCAAGGGATACCTACCACGCCCCATTATTGCTCGTGGCCATGATGCCAAAGGCGACGGTA
GAGGTGGGCGGGCGCACGCACAGCGCCATGTCCATCGAGCACTTCATCCTGCGCCTGCCC
TACAGCGTCAAGCACGGTGCGCCCTGAGGCCGAAGGAACCAAGGGCGACGACGCGGCGGC
GCGCGCTGGCGCGTTCGGACTGGAGTGGCCGGAGCCGCTCGTCACCTTCGCGCTCTCCTG
CGGCAGCTGGTCCTCCCCCGCCGTGAGGGTGTACACGGCGGCGCGGGTGGAGGAGGAGCT
GGAGGGCGCCAAGCGGGACTACCTGCAGGCGGCCGTGGGGGTGTCGTCGCCGGCGAGCCT
CGCCATCCCCAAGCTGCTGCACTGGTACCTGCTCGACTTCGCCAAGGACGTGGACTCGCT
CATGGACTGGGTGTGCCTGCAGCTGCCGCCCGAGCTGCGGCAGGCCGCCATGCGCGCCGT
GGCCGCCGACGCGCGCCGTGGACGCCGCATCCAGGTCCTGCCCTACGAGTTCAGGTTCAG
GTACCTCCTGGCCGCGTGAGGCGTGCTGCTGTGTTTGTAGTAAGTTGTAACTAGCTTTGT
ACACAGGGTTTGCAAGTGAAGGAAGGAATAAAGGCTTACGGTTCGTGTTTTGCTGCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_23360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28850.1	611	3e-60	protein\|expressed protein
Brachypodium v1_2	Bradi4g32440.1	589	1e-56
Arabidopsis v10	None