barSeed - Barley Seed Development Database

Probe CUST_16902_PI390587928

Source Contig U35_23362

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16902_PI390587928	Hv_44K_v2	CTGTAAATAATGGGCACAAGAATATTCAGTTATACAGAGACCGCTAATCTCAGGATAAAA	489	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.751	5.352	1.073	0.768	0.349	0.313
Raw	233.697	297.433	51.518	61.712	8.469	9.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375446	1107	2e-23	1039 - 1096	100	58 / 58	plus	ABC25476 ABC43512
MLOC	MLOC_11060.1	1436	2e-23	19 - 76	100	58 / 58	minus	ABC25476 ABC43512
JLOC1	JLOC1_7283.1	1398	1e-23	1243 - 1300	100	58 / 58	plus
Harvest21	ABC25476	559	3e-25	487 - 546	100	60 / 60	plus	ABC25476
Harvest35	U35_23362	562	3e-25	490 - 549	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_23362 562 Hv_44K_v2
GAGGGCCCCACGTCCCCGTGCACGCCACCAGCCTCCTCCTCATGGAAGTGACGGACTACG
AGCTGAAGGGGCTGCAGAGGGACGCGATGCCGTCGCACATGGCGCTGACGGTGAGGGGCA
CGCTGTACCCGCAGCCGGAGGGGCGGAGGAGCCTGAGGGGCCAGGTGGAGATGAGCGTGG
GGTTCAACCTGCCGCCCGTGCTGGCGCTCGTGCCGGAGCCCATCATCCGGGGCGTCGGCG
ACACCGTGCTCCGGCAGCTGGCGGAGCAGATGAAGCACGACTTCGACACCGGCCTCGCCG
CCGACTTCAAGAAGTACCGCACCGAGAAGCTCACCGAGGGGAGGACGAAACACTGAACGC
CATTTTCCTTCTCTTCTTTTTGTTTTCCCCTGCAGGTGGCGTCAACTTGTCTCGCGAGAT
CAATAGGTTGCTAATGTATCGTGTTATTCGCTGACAAGATAATAACTTAGGACCCAATAG
TTGTAAATACTGTAAATAATGGGCACAAGAATATTCAGTTATACAGAGACCGCTAATCTC
AGGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_23362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g07200.3	261	1e-58	protein\|expressed protein
Brachypodium v1_2	Bradi1g73817.1	292	2e-62
Arabidopsis v10	None