barSeed - Barley Seed Development Database

Probe CUST_16893_PI390587928

Source Contig U35_35348

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16893_PI390587928	Hv_44K_v2	TTTCTCTACAAAATGTGTCCGTTTCCAGCAACTATGGTATGTGCTCATGCAAAAGGGGCA	64	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.104	1.627	1.319	1.083	0.325	0.591
Raw	80.954	188.782	131.381	168.161	17.395	35.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6434.1	605	2e-24	154 - 213	100	60 / 60	minus	None
Harvest35	U35_35348	557	3e-25	65 - 124	100	60 / 60	minus

Contig Sequence (557 bp)

>U35_35348 557 Hv_44K_v2
GGCGAATTGGGCCCTCTTCAAGATGCTCGAGCGGCCGCTCAAAAGCTTATGGTTGCCAGG
AGCATGCCCCTTTTGCATGAGCACATACCATAGTTGCTGGAAACGGACACATTTTGTAGA
GAAACAAGGAAGCCTGGAGATGTACTACCCATACATACGTGCTTGTAAATTGTTCAGAGC
TCATCGCACATCAGTATGGTCCGATACTCAAGGTTGGCGGCATGATGTCCAAGACCTTGT
CTAAGGCTCGAAGGGCGACACTGATTTTGCTCCTCATGCCTTCGGTAGACGACGATGGAT
CACGCACTGACTGCCGTACTAGCGCCTCAAATTCTTCCAAGGCTCGTGAGCAAAATTCCA
CGGCTTGGGGAGCAGCTTTGCCTTGACCAGTAGAGAAAGCATATTTTACCACTTCTTGGA
TATCTAAAAGCACAGATGATGCCGGGCAACAGTCAAGTAGTGATACACACTCATGGTAAG
TTGGCATCTCCAATTCCAAGCGCTCATCTATTTCTCTGAACCAGTCTCGACTCAACAGCA
CCTGCGGAACACAGTCC

Homology of Contig U35_35348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None