barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16890_PI390587928Hv_44K_v2TGTTGTTCCTCCATCTTTAGCTAGAAATTCTTTGGGGACGGTTGGCTTTGCTTCAAAAAA568GeneList: yellowgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8291.8851.5211.2210.6510.561
Raw 64.256223.586154.422190.99335.91433.933



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_113916383e-25569 - 62810060 / 60plus



Contig Sequence (638 bp)

>U35_11391 638 Hv_44K_v2
ACCAAGGGCGACATGGCCAGCAATGTGTTCTATGTCACCGGCACCACAGCCGGCCAGGCC
GTCCAGCAAAACGCCATTGAAGCCGTGAGGGAGAAGGTCGGCGTGGACTGCCTTGTCGTC
GAGGAGCACCGGCCGCGGCTCTACCAGAAGGCTCGTGGGCAGGATGACCGGGACGACCGC
AACGGCGCCGGCATTGGGCTGCTCTACCTCGGCAACCTTGTGATGAGGAACCTCTACAAC
CTGGGCCTGATCAAATCTTGCTCATGAGGCAGAAACCGGACGCCAACGATCAAGCCAGGC
TCTGCTCGTCTAGGCACCCGGCTTGGTTCAACGTCGATTCCAGAATCATCTCTTGTACAG
TGACTGAGGAAGATCCAGGAAAGCAAGCGCTGCGCAAGGATCAGGGTCGGGCAGGATCTG
GAAGAAGCAGGATGATGGAACCTAGCAGTAGACATGCACATAAGGGGATCCGATTACGAT
TAGATGTTGCTAATTAGCAGTAGTACTAGTGCCGGACTGCCGGTGTTTAGTGTGTGCAAT
TCATGATGATTTGTTCTCTGTTCCTCGCTGTTGTTCCTCCATCTTTAGCTAGAAATTCTT
TGGGGACGGTTGGCTTTGCTTCAAAAAAAAAAAAAAAA



Homology of Contig U35_11391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None