- Probe CUST_1688_PI390587928
- Source Contig U35_26011
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1688_PI390587928 | Hv_44K_v2 | AGAAGCTTCTTCGTATGCAGGCCAATAAATGTAGATTTATACTGGCTTATGTATCACGAG | 620 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.467 | 0.715 | 1.308 | 1.820 | 0.945 | 1.646 |
| Raw | 40.400 | 100.450 | 156.296 | 367.053 | 61.874 | 116.961 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59910.5 | 1002 | 2e-24 | 634 - 693 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59910.3 | 981 | 2e-24 | 583 - 642 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59910.2 | 3528 | 2e-24 | 431 - 490 | 100 | 60 / 60 | minus | ABC04654 |
| MLOC | MLOC_59910.4 | 1103 | 2e-24 | 338 - 397 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_59910.1 | 4777 | 2e-24 | 1696 - 1755 | 100 | 60 / 60 | minus | ABC04654 |
| JLOC1 | JLOC1_39028.3 | 1432 | 8e-25 | 768 - 827 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39028.2 | 1380 | 8e-25 | 716 - 775 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39028.1 | 1371 | 8e-25 | 707 - 766 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28810 | 677 | 3e-25 | 583 - 642 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26011 | 715 | 3e-25 | 621 - 680 | 100 | 60 / 60 | plus |
Contig Sequence (715 bp)
>U35_26011 715 Hv_44K_v2 TTCAAATTTCTTTCTACCTGCAGCTGCGGTCGCCGGCGGCGAGGAGGAGGAGGAGGGGGG AAGGAGCTGAGTGATGGCGGATGCCGGCGGCGCGAGGGAGCGGGAGGAGGAAGAGGAGGA CGACTTCGTCTGCCTGGACCCGTCCTTCTTCATGAACCGCAACTACGAGATGAAGACCTT CACCTACGGCTCCCAGGAGCTCCAGCTCCTCTGCCTCAGCTCCGCCTGCACTGATTATGA TCTTACTGGACAGTTAGTATGGCCAGGTGCTGTTCTGATGAACACGTACCTATCTGAACA CCCTGAGACTGTGAAGGGGCGTTCATTAATTGAGTTAGGATCTGGGATCGGCATTACCGG CATATTGTGCAGCCGTTTCTGCAAAGAGGTGGTATTGACTGATCACAATGATGAAGTTCT AGAGATTATAAAGAAAAATATAGAGACGCAGTCATGTGCTGGCAATGCGGATGCAGTGTT GACTGCTGAGAAGCTAGAATGGGGAAATCATGATCATCTAAGCAATATCATTGAAAAACA TCCTACTGGATTTGATCTCATTCTTGGAGCTGATATCTGCTTCCAGCAATCTAGCATTCC ATGTCTCTTTGATACTGTAGAGAAGCTTCTTCGTATGCAGGCCAATAAATGTAGATTTAT ACTGGCTTATGTATCACGAGCCANAGTCATGGATGCACTGGTACTGAAGGAAGCT
Homology of Contig U35_26011 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g44730.1 | 253 | 3e-118 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g19867.1 | 249 | 3e-123 | |
| Arabidopsis v10 | AT2G26810.1 | 256 | 7e-82 | Putative methyltransferase family protein | chr2:11433900-11436078 REVERSE LENGTH=256 |