- Probe CUST_16885_PI390587928
- Source Contig U35_47322
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16885_PI390587928 | Hv_44K_v2 | TTTGCCCCAGATCTAATCATGTTAGATGCTTACGAGACTGTCGAATCATTGGATGATGGC | 481 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371182 | 3845 | 3e-22 | 2317 - 2375 | 98 | 59 / 60 | plus | ABC13943 ABC13944 ABC14735 ABC48262 |
| MLOC | MLOC_55259.1 | 3546 | 3e-22 | 1525 - 1583 | 98 | 59 / 60 | minus | ABC13943 ABC13944 ABC14735 ABC48262 |
| MLOC | MLOC_55259.2 | 3586 | 3e-22 | 1503 - 1561 | 98 | 59 / 60 | minus | ABC13943 ABC13944 ABC14735 ABC48262 |
| JLOC1 | JLOC1_35632.7 | 3619 | 1e-22 | 1966 - 2024 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35632.6 | 3610 | 1e-22 | 1957 - 2015 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35632.5 | 3610 | 1e-22 | 1957 - 2015 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35632.4 | 3613 | 1e-22 | 1960 - 2018 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35632.3 | 3593 | 1e-22 | 1940 - 1998 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35632.2 | 3691 | 1e-22 | 2038 - 2096 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35632.1 | 3564 | 1e-22 | 1911 - 1969 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC48261 | 544 | 3e-25 | 482 - 541 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47322 | 544 | 3e-25 | 482 - 541 | 100 | 60 / 60 | plus |
Contig Sequence (544 bp)
>U35_47322 544 Hv_44K_v2 CGAAAACTCTATATTTCAGGTTTCTACGTCTGATGAGGGTCGTGACATGTGGCAAGTGTA CTTGGATATGAAGGCATATGCTGTTGCTCTGTCCCATTGCCTTAACTCTTTCCAGAGGGA CCAAGTTTATCTAGTGCAGGCTGATGCTGCATTTGCTGCAAAAGAATATTACATAGCAGC TTCGTTCTATGCAAAGATGAACTATATTTTATCATTTGAAGAGATCAGTTTAAAGTTTAT ATCCATAGGTGAGCAGGATGCTCTCAGGACTTTCTTATTGAGAAGGCTTGATAACCTCAC CAAAGATGACAAGATGCAAATAACGATGATCTCGACTTGGGCTACTGAGCTGTACTTAGA TAAGATAAATCGACTCCTATTGGAAGATGGCACAGGCGCTACTACAAATACGCAAGGAGA AGCAAGGAAAGCCTTGGAAGTGCTTCAACGACATAATGTTCCAGTAGACCTTGTGTATAA ATTTGCCCCAGATCTAATCATGTTAGATGCTTACGAGACTGTCGAATCATTGGATGATGG CAAG
Homology of Contig U35_47322 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g08060.1 | 1001 | 5e-69 | protein|vacuolar protein sorting-associated protein 18, putative, expressed |
| Brachypodium v1_2 | Bradi3g15520.1 | 992 | 4e-71 | |
| Arabidopsis v10 | AT1G12470.1 | 988 | 4e-56 | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988 |