barSeed - Barley Seed Development Database

Probe CUST_16884_PI390587928

Source Contig U35_11394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16884_PI390587928	Hv_44K_v2	CTTGCATCAACTAGCAGCTCTTGTAACATCACACATTTTGATCACTGTTTCACGTCTAAA	398	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60844.1	2426	2e-23	12 - 69	100	58 / 58	minus	ABC23742
Harvest21	ABC23742	471	3e-25	15 - 74	100	60 / 60	minus	ABC23742
Harvest35	U35_11394	472	3e-25	399 - 458	100	60 / 60	plus

Contig Sequence (472 bp)

>U35_11394 472 Hv_44K_v2
TATTCATGCGTTCCATCATTCATCAGTTAATAAGAGGTTGGCGGCAACCGGCGGAAGTCC
GACCACGACCAGTAACAACGATGGAAACTGGGCAGTCTCATAATATTAGGTTTTTAAATC
GACGAAATGGGACTTTTGGATGGATATAGCATGGCCTACCTGAGAAGGAAGTATTCATGT
GCGACACAGAAAGTTCCTTTGTTTGTACCTTTTGGTTTTGTGGGCTCTTTTGCAGTTGCA
GGGACAGAGGCACTAAGCATCTTAGTTTAAAAAATCATCTTGTTTATGCAGTTGCTAGAT
TTCGTCCTTTGGTTAAGGCTAGTTCTGCGCAAGGCATTTTTCTTTGGTGAGATTACACGG
GTTAGAATCTGGCACATACAGTTTGCCCTTCTGTTCTTCTTGCATCAACTAGCAGCTCTT
GTAACATCACACATTTTGATCACTGTTTCACGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_11394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None