barSeed - Barley Seed Development Database

Probe CUST_16881_PI390587928

Source Contig U35_47325

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16881_PI390587928	Hv_44K_v2	AACGTGGAAACGTGCCACCTCACGAACTATTCACTCTCCCACGTGGTGCGTGGGCAGCGG	194	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362368	2285	2e-24	230 - 289	100	60 / 60	plus	ABC11912
MLOC	MLOC_60591.6	3862	7e-23	3427 - 3486	98	59 / 60	minus	ABC11912
MLOC	MLOC_60591.5	4015	7e-23	3462 - 3521	98	59 / 60	minus	ABC11912
MLOC	MLOC_60591.3	5905	7e-23	5374 - 5433	98	59 / 60	minus	ABC06105 ABC11912
MLOC	MLOC_60591.4	5897	7e-23	5366 - 5425	98	59 / 60	minus	ABC06105 ABC11912
JLOC1	JLOC1_39532.2	6129	4e-23	612 - 671	98	59 / 60	plus
Harvest21	ABC48267	523	3e-25	195 - 254	100	60 / 60	plus
Harvest35	U35_47325	523	3e-25	195 - 254	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_47325 523 Hv_44K_v2
CGGCAATGGCCCCCAAGCATGCCGGCCGTGGCAAGGGCCGGGGCGGCGGCGGCAAGGGCG
ACCGCAAGAAGAAGGAGGAGAAAGTGGTGCCGAGCGTGCTGGACGTCGCGGTCACCACCC
CCTACGAGTCCCAGGTGACACTCAAGGGGATATCGACGGATCGCGTGCTGGACGTGCGGA
AGCTGCTGGGGTCGAACGTGGAAACGTGCCACCTCACGAACTATTCACTCTCCCACGTGG
TGCGTGGGCAGCGGCTGGAGGACGGCGTGGAGGTCGTGGCGCTGAAACCCTGCGCGCTCA
CCATCGTGGAAGAGGAGTACGCGACGGAGGAGGCCGCGGTGGCGCACGTCCGCCGGCTGC
TGGACATCGTCGCCTGCACCACCGCCTTCGCCAAGGCGAAGCAGCACAAGTCCTCGTCCA
AGCACGCGCAGCGCCCCGCCACGCCCCCGTCTCCCCCGCCCGCCTCCTCCGCCGGGGCCA
ATGGCGTCGGCGCCGGCGCCGGCGGCGAGGCGCCCGCGATATC

Homology of Contig U35_47325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None