- Probe CUST_16878_PI390587928
- Source Contig U35_47326
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16878_PI390587928 | Hv_44K_v2 | GAAGACTAGAGTGATCTGGTCATGTGTGTGTTCTTGTTGCGTAACTGTATCATTAAGATG | 27 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.063 | 0.928 | 2.099 | 1.239 | 1.661 |
| Raw | 30.639 | 374.666 | 4800.163 | 15891.077 | 3585.283 | 5181.657 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68499.1 | 1141 | 7e-23 | 1038 - 1097 | 98 | 59 / 60 | plus | ABC48273 |
| Harvest21 | ABC48273 | 502 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | ABC48273 |
| Harvest35 | U35_47326 | 502 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus |
Contig Sequence (502 bp)
>U35_47326 502 Hv_44K_v2 TTTTTTTTTTTTTTTTTAATTAATGTACATCTTAATGATACAGTTACGCAACAAGAACAC ACACATGACCAGATCACTCTAGTCTTCTTGAGACCCTGCATATAGATGGTACACATGACC AGATCACTCTAGTCTTCTTGAGACCCTGCATATAGATGGTTACTTGCTGTGCTTGGCTCT AGTAATCTAGAGCAGCACACCATGCTCATACATAAAATCTAGTGCATATGTAGAAGGTAT ATAGCTAGGCAGCTAGCCCTAGCCACCATGCATAGATCGATTAGCCGTCCTCGCGCTGCC TAATATAGCTCAAGAATGTCCGCGAAGTCCTGGACTCCCATGGAGAGCACGGGGTCGTCG TCTTCATCCACATTGGCATCGATGTCGATGTGATTCTCACTGTTGTTACCATGGTCATGA GCAGCGGCGACACCCGTGTTATTAGCTGCACTACCTGCGCCCGCAGCGCCCACCATGGCC ACATCAGCGAGGGGTTCGATAG
Homology of Contig U35_47326 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |