barSeed - Barley Seed Development Database

Probe CUST_16877_PI390587928

Source Contig U35_47327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16877_PI390587928	Hv_44K_v2	TCTCTTCGTCCTTTGTCACCGCGCACGAGTGTTTTTGCTTGCAGGTGCTCGTGCATGGAG	1	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.088	0.073	1.179	2.832	1.389	2.132
Raw	2.826	2.792	92.264	325.088	65.739	104.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68499.1	1141	2e-24	136 - 195	100	60 / 60	plus	ABC48273
JLOC1	JLOC1_45324.1	957	8e-25	20 - 79	100	60 / 60	plus
Harvest21	ABC48274	501	3e-25	2 - 61	100	60 / 60	plus
Harvest35	U35_47327	501	3e-25	2 - 61	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_47327 501 Hv_44K_v2
CTCTCTTCGTCCTTTGTCACCGCGCACGAGTGTTTTTGCTTGCAGGTGCTCGTGCATGGA
GGCGAGCACGGAGGCGATGACGAGGGAGGAAGCTGGCCGCCGCGCCCACCGCCGTCGCGG
TTCGAGCTCGAAGCCGCCGGCGCCTCGCAAGAACCTGGGGCTTCTGGGCGTGCGGCAGCG
ACACTGGGGTCGATGGGCGGCCGAGATCCGCGTGCCCCGCACCCGCGCCAGGCTGTGGAT
CGGCACCTTCCAGTACCCCGAGCAGGCGGCGCTCGCCTACGACGTCGCGCTCTTCTGCTT
CTACGGAGACACCCCACCGCGCAGCTACAACTTCCCCACCGCGCCGCGGCCCTACGTCCC
CGAGTACCGCCGCACCAGCCTCACGCTCGCCAATATCAAGGCCATCGCCGACAGGCACGC
TCACAATCTCTACGGCCTCGTCGCTCGGTCGAACGTGCCCGTGCCCATGCCGGTGCCCGT
GCCAGCAGCTATCGAACCCCT

Homology of Contig U35_47327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None