- Probe CUST_16875_PI390587928
- Source Contig U35_47328
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_16875_PI390587928 | Hv_44K_v2 | ATGGCTTCAAGTACATTCAGACCAGTGGGCTGGCTTCAAAGTCTAGAATTTCCTGCCAAA | 14 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.823 | 1.830 | 0.984 | 0.952 | 0.696 | 0.836 |
Raw | 456.214 | 713.011 | 335.881 | 507.204 | 131.036 | 170.908 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_59542.2 | 2773 | 2e-23 | 2645 - 2702 | 100 | 58 / 58 | plus | ABC48276 |
MLOC | MLOC_59542.1 | 2822 | 2e-23 | 2726 - 2783 | 100 | 58 / 58 | plus | ABC48276 |
JLOC1 | JLOC1_38755.1 | 2924 | 1e-23 | 2671 - 2728 | 100 | 58 / 58 | plus | |
Harvest21 | ABC48276 | 434 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC48276 |
Harvest35 | U35_47328 | 434 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (434 bp)
>U35_47328 434 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGCAGGAAATTCTAGACTTTGAAGCCAGCCCACTGGTCTGAAT GTACTTGAAGCCATATTGGTTGCAACGAGTTTTGGTTCAACCTGAGCTACCCAAATACTA AGGTTATCATACAAAACTGACCTCGCAAGGCCTACGGTCACAGAATCACAACAAGCTACT TTGTCCTTGTGTGACAATGGGCATTGCAGAGCTTGACAAAAGTCTACTATCTCCACTACG GCGTAGTCATGAGGGGAGCCATTTGAGACGCTCCTACCTCTGTCAGACTTGAGCACACTT CCCTCCTAGGTACCACCAGAACGACCCAAAAAATGATCTAGCAGATAGATTGGCATGTTG ATAAGCAGAATGCACATCTTCCATAATCAGCAGAAATATCCCCGGCAATTTGAGGATCCA CAAAGGCAGCTCTT
Homology of Contig U35_47328 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |