barSeed - Barley Seed Development Database

Probe CUST_16874_PI390587928

Source Contig U35_47329

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16874_PI390587928	Hv_44K_v2	AAGAGTTAGAAATATCAGCGTGAGGACTGGAGTGTTAGACGAGAAAGCTGCTGCAACTCA	439	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.318	1.118	1.125	0.818	0.584	0.428
Raw	145.054	167.496	169.458	183.475	47.475	38.321

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_639.1	3391	2e-24	553 - 612	100	60 / 60	minus	None
MLOC	MLOC_639.2	2887	2e-24	544 - 603	100	60 / 60	minus	None
JLOC1	JLOC1_393.1	2871	8e-25	2262 - 2321	100	60 / 60	plus
Harvest21	ABC48278	520	3e-25	440 - 499	100	60 / 60	plus
Harvest35	U35_47329	520	3e-25	440 - 499	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_47329 520 Hv_44K_v2
CTGCAATTGGCTCTGTAGCAGCTGCTGCAGAACAGGCATTTATCCCATACGCAGAGAAGG
TTCTTGAAATGATGAAAGGCTTTATGGTGCTCACAAAGGATGAAGATTTGTGTGCACGAG
CTAGGGCTACTGAGGTTGTTGGAATAGTAGCAATGGCAGTTGGCAGAACCAGAATGGAAA
CCATATTACCTCCTTTTATTGAGGCTGCTATTTCTGGTTTTGGATTGGATTATAGTGAGC
TAAGGGAGTACACTCATGGTTTTTTTAGCAACATTGCTGAGATTCTGGATGATAGTTTCT
CACAGTATCTTCCTCATGTTGTGCCTCTTGCATTTTCCTCGTGCAACTTGGATGATGGTT
CTGCTGTGGACATTGATGATGCTGATGGTGTTGACAATGGATTTAGTGGTGTTTCCTCTG
ATGATGATGATGATGAGCCAAGAGTTAGAAATATCAGCGTGAGGACTGGAGTGTTAGACG
AGAAAGCTGCTGCAACTCAGGCTATTGGATTTTTTGCACT

Homology of Contig U35_47329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g67430.2	907	1e-78
Arabidopsis v10	AT4G27640.1	1048	4e-67	ARM repeat superfamily protein \| chr4:13798013-13802976 REVERSE LENGTH=1048