barSeed - Barley Seed Development Database

Probe CUST_16873_PI390587928

Source Contig U35_23370

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16873_PI390587928	Hv_44K_v2	GACTTTTCCAAATATGCCAATATTTGCATTAGTGGACTGGAACCCTGCAGGGCTCTCTAT	903	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14192.11	1752	2e-24	941 - 1000	100	60 / 60	plus	None
MLOC	MLOC_14192.13	2213	2e-24	895 - 954	100	60 / 60	plus	None
MLOC	MLOC_14192.4	2291	2e-24	845 - 904	100	60 / 60	plus	None
MLOC	MLOC_14192.6	2399	2e-24	953 - 1012	100	60 / 60	plus	None
MLOC	MLOC_14192.12	1606	2e-24	817 - 876	100	60 / 60	plus	None
MLOC	MLOC_14192.8	1715	2e-24	1022 - 1081	100	60 / 60	plus	None
MLOC	MLOC_14192.7	1623	2e-24	927 - 986	100	60 / 60	plus	None
MLOC	MLOC_14192.1	1680	2e-24	989 - 1048	100	60 / 60	plus	None
MLOC	MLOC_14192.3	1542	2e-24	851 - 910	100	60 / 60	plus	None
JLOC1	JLOC1_9679.4	1611	8e-25	822 - 881	100	60 / 60	plus
JLOC1	JLOC1_9679.2	1698	8e-25	839 - 898	100	60 / 60	plus
JLOC1	JLOC1_9679.1	1653	8e-25	839 - 898	100	60 / 60	plus
Harvest21	ABC22005	966	3e-25	904 - 963	100	60 / 60	plus
Harvest35	U35_23370	966	3e-25	904 - 963	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_23370 966 Hv_44K_v2
GGAAGTGCAGCGCGGATGGCGATGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGTTCCC
GCAGCGTCGCTCTTCGGTGCGGACTGCCGCCTCTGCTCAGCCGACGTGCTCTCGCCCCCC
GAGGTCTGTCATACGCCAACTTCCCTCGTCCGCCTCTGCCTCTGATCGAATCGACATGCT
TTGCTTCTATTGTGTGTGGCCAACTCGATAGGTTCGGGCAAGGATCGAGGTGGCGGTGCT
CAATTTCCTCGCCTTGCTTTCGTCTCCCTCTTCTCCGTCCATCTCCGTCCTCCCCCTGAT
TTCCCGCAAGTCCACCAACTGCAGCCTGCGCAGCGGCTTGCTGAGTGATGTTTCATCGGT
GTATCTGTCCTACGCCTTCTGCAAGAGGTCGCTAATGAGAGAAAATGATGCCAAGGCATT
CGTCAGAGTATGGAAAGTCATGGAGATGTGCTACAAGATCTTGGGCGAAGGGAAGCTTGT
CACCCAGCGGGAGTTGTTCTACAAACTACTGTCGGACTCACCCAAGTACTTCAGCTGTCA
GCGTCATGTGAATCAAACCATCCAAGATGTTGTTTCATTGCTCCGTTGCACAAGGCAGAG
TTTAGGAATCATGGCATCAAGTAGAGGGGCACTGATTGGACGACTTGTGTTGCATGAACC
AGAGGAAGAACACATCGATTGTTCCATTCTCGGACCTTCTGGGCATGCCATTACTGGGGA
TCTGAACCAATTGAGCAGATTAAATTTGTCTTCAGATGCCCGTTATCTCATTCTAGTGGA
GAAGGATGCCATATTTCAGAGGCTGGCTGAAGACCGCTTATATAATCAGCTTCCATGTAT
CCTGATCACTGCAAAAGGATATCCTGATATCGCAACGAGGTTTATCTTGCATCGACTGAG
CCAGACTTTTCCAAATATGCCAATATTTGCATTAGTGGACTGGAACCCTGCAGGGCTCTC
TATACT

Homology of Contig U35_23370 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06050.1	386	1e-125	protein\|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
Brachypodium v1_2	Bradi3g16580.1	383	3e-142
Arabidopsis v10	AT1G63990.1	383	9e-90	\| Symbols: SPO11-2 \| sporulation 11-2 \| chr1:23743323-23745351 REVERSE LENGTH=383