barSeed - Barley Seed Development Database

Probe CUST_16871_PI390587928

Source Contig U35_23372

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16871_PI390587928	Hv_44K_v2	GGTGCTTGTATTGTTTGATACAGTATCTATGAAAATGGTCCGTAGATTTGAAGGACATAC	867	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.418	0.994	1.561	1.026	0.685	0.393
Raw	42.824	42.881	64.613	60.698	16.157	9.665

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363137	3081	2e-24	1533 - 1592	100	60 / 60	plus	ABC24129
MLOC	MLOC_5664.1	3200	2e-24	1295 - 1354	100	60 / 60	minus	ABC24129
MLOC	MLOC_5664.2	3036	2e-24	1290 - 1349	100	60 / 60	minus	ABC24129
JLOC1	JLOC1_3658.2	3419	8e-25	1862 - 1921	100	60 / 60	plus
JLOC1	JLOC1_3658.1	3046	8e-25	1489 - 1548	100	60 / 60	plus
Harvest21	ABC19942	927	3e-25	868 - 927	100	60 / 60	plus
Harvest35	U35_23372	927	3e-25	868 - 927	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_23372 927 Hv_44K_v2
TATTAGCATTTGGAATCTTGAGAAGAGAAGGCTGCACTCTGTGATTAGGGAGGCCCATGA
TGGTTCTATTGTATCACTTCATTTCTTTGCCAATGAACCTATTTTGATGAGCTCAGCAGC
TGATAATTCAATAAAAATGTGGATATTTGATAATAATGAAGGAGATGCTCGTCTGTTACG
ATTTCGAAGTGGACATAGCGCTCCACCTCGGTGCATAAGATTTTATGGCAACGGAAAATT
CATCTTATCTGCTGGTCAAGACCGTGCCTTCCGTCTTTTCTCAGTTGTTCAGGATCAACA
AAGCAGAGAGCTTTCTCAGCGGCATGTGGCAAAAAGAGCAAAAAAGCTTAGAGTAAAGGC
GGAAGAGATAAAGCTAAAACCAGTTATTGCATTTGATTGTGCTGAGATACGTGCACGTGA
TTGGTGTAATGTTGTTACATGCCACATGGATACTTCAAAGGCATATGTATGGCGTCTTCA
GAACTTTGTTATAGGTGAACATATTCTTACACCATCGTCAGAGACTGAGTCACCGATTAA
GGCTTGTACTATAAGTGCATGTGGTAATTTTACTATCTTGGGCACCGAAGGAGGTTGGAT
CGAAAAATTTAACCTTCAATCTGGGATTAGTCGTGGTAGTTACATTGATAGCTCGCTGTC
ATTGCAATGTGCACATGAAGGGGAAGTTGTTGGATTAGCGTGTGATGCTACAAATGGCTC
TCTGATTAGTGCTGGATACCGTGGGGATATTAAGGTGTGGGATTTTAAAAGTTGCAAGCT
AAAATCCAAATTCAATGTTGGTAAATCTGTAACTAAGATTGCATATCACCGGGCAAATGG
TCTTCTTGCTACTGTAGCAGATGATATGGTGCTTGTATTGTTTGATACAGTATCTATGAA
AATGGTCCGTAGATTTGAAGGACATAC

Homology of Contig U35_23372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43690.1	904	0.0	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g30580.1	905	0.0
Arabidopsis v10	AT4G04940.1	910	1e-158	transducin family protein / WD-40 repeat family protein \| chr4:2511212-2517052 REVERSE LENGTH=910