barSeed - Barley Seed Development Database

Probe CUST_16869_PI390587928

Source Contig U35_23374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16869_PI390587928	Hv_44K_v2	TTGATCTTAGTGTGCAATACTGGACGAGCCGAGGATGGGCATTCGTTGATGTTAACTATG	671	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372132	2596	7e-23	1723 - 1782	98	59 / 60	plus	None
MLOC	MLOC_36491.3	2086	7e-23	1167 - 1226	98	59 / 60	plus	None
MLOC	MLOC_36491.4	2076	7e-23	1157 - 1216	98	59 / 60	plus	None
MLOC	MLOC_36491.1	1940	7e-23	1174 - 1233	98	59 / 60	plus	None
MLOC	MLOC_36491.2	1896	7e-23	1090 - 1149	98	59 / 60	plus	None
JLOC1	JLOC1_23501.6	2166	4e-23	1049 - 1108	98	59 / 60	plus
JLOC1	JLOC1_23501.5	2160	4e-23	1056 - 1115	98	59 / 60	plus
JLOC1	JLOC1_23501.4	2197	4e-23	1080 - 1139	98	59 / 60	plus
JLOC1	JLOC1_23501.3	2184	4e-23	1080 - 1139	98	59 / 60	plus
JLOC1	JLOC1_23501.2	2194	4e-23	1090 - 1149	98	59 / 60	plus
JLOC1	JLOC1_23501.1	2207	4e-23	1090 - 1149	98	59 / 60	plus
Harvest35	U35_23374	829	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (829 bp)

>U35_23374 829 Hv_44K_v2
TTCGGTACGAGGCCTCGTGCCGCCAGCGATAGTAGAATCTCCTAGTGAACCCAAGTGGTC
TTCAAAAGGTGAGCTGTTCTTCATAACTGACCGACAGAGTGGATTTTGGAACATTTATAA
ATGGGATGAGCAGAGCAATTTAGCCATGCAAGTATACTCACTTGATGCTGAATTCTCGAA
GCCAATGTGGGTTTTTGGTGTCAGCTCCTATGCTTTCCTCGGAAATGACGACCAGAGTCA
GAAAATAGTTTGCTGCTACAGGCAGAATGGGAAGTCATATGTTGGGTTGCTGGACCATGA
TTCAGGGTCATTTTCAAAATTTGACCTTCCCTTCTCTGCTGTAACTAACATAGTTTGTGC
AGATGGATCTTTCTATGTTGAGGGTGCATCTGCTGGTCTTCCAGTATCGATAGCAAAGGT
GACACTAGATGAAAAGAGAACAATGGCAACTGACTTTTCTATAGTTTGGTCCTCCTCAGA
GGACATAACGAAATATACACCCTACTTCAGTTTGCCTGAATTTATGGAGTTCCCAACCGT
AATCCCTGGCCAGCATGCTTACGCTTATTTCTATCCTCCATACAACCATACTTTCGAAGG
TTCATCAGATGAGAAGCCTCCATTATTGGTCAGAACCCATGGTGGACCTACAGATGAAGC
ACGTGGGACTCTTGATCTTAGTGTGCAATACTGGACGAGCCGAGGATGGGCATTCGTTGA
TGTTAACTATGGGGGAAGCGCAGGCTATGGAAGAGATTATCGAGAGAGGCTTTTGGGGCA
ATGGGGTGTTGTGGATGTAAATGATTGCTGCAGCTGTGCTACATTTCTG

Homology of Contig U35_23374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11190.1	680	1e-168	protein\|OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed
Brachypodium v1_2	Bradi1g65740.1	674	2e-177
Arabidopsis v10	AT5G36210.1	730	7e-121	alpha/beta-Hydrolases superfamily protein \| chr5:14248202-14253272 REVERSE LENGTH=730